RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SUMF2Q8NBJ7 301 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 MCFD2Q8NI22 146 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 RAB40AQ8WXH6 277 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 SLC25A38Q96DW6 304 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DPCDQ9BVM2 203 aaPredicted RBP13.12□□□□□ -0.31
USP40-206ENST00000443711 SLIRPQ9GZT3 109 aaKnown RBP13.12□□□□□ -0.31
USP40-206ENST00000443711 ABCG5Q9H222 651 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 ZNF581Q9P0T4 197 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 RCC2Q9P258 522 aaKnown RBP13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4Q9UBX2 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 PEX16Q9Y5Y5 336 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 ITPR3Q14573 2671 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 A0A0A6YYD4 124 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 MCRIP1C9JLW8 97 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 MGST3O14880 152 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 PSPNO60542 156 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 NDUFB7P17568 137 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 CHATP28329 748 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 IL2RGP31785 369 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 RBM39Q14498 530 aaKnown RBP13.11□□□□□ -0.31
USP40-206ENST00000443711 GRK1Q15835 563 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 SIGIRRQ6IA17 410 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 OR8H2Q8N162 312 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 OR4S1Q8NGB4 309 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 OR10R2Q8NGX6 335 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 ST8SIA4Q92187 359 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 S100A16Q96FQ6 103 aaKnown RBP13.11□□□□□ -0.31
USP40-206ENST00000443711 SSBP3Q9BWW4 388 aaPredicted RBP13.11□□□□□ -0.31
USP40-206ENST00000443711 SHARPINQ9H0F6 387 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 PPA2Q9H2U2 334 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 DIABLOQ9NR28 239 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 CSMD2Q7Z408 3487 aa13.11□□□□□ -0.31
USP40-206ENST00000443711 FOXI3A8MTJ6 420 aaPredicted RBP13.1□□□□□ -0.31
USP40-206ENST00000443711 H7C1Q1 480 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 RAB27BO00194 218 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 HPGDSO60760 199 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 FOXH1O75593 365 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 APOA1P02647 267 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 OR3A1P47881 315 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 KCNJ3P48549 501 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 SEC61A1P61619 476 aaKnown RBP13.1□□□□□ -0.31
USP40-206ENST00000443711 C11orf91Q3C1V1 193 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 NKAPLQ5M9Q1 402 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 CD276Q5ZPR3 534 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 Q6ZTK2 550 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 GDPD3Q7L5L3 318 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 BIVMQ86UB2 503 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 CMTM4Q8IZR5 234 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 NEK7Q8TDX7 302 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 RAB3CQ96E17 227 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 C1orf159Q96HA4 380 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 CHST6Q9GZX3 395 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 NXF2Q9GZY0 626 aaKnown RBP13.1□□□□□ -0.31
USP40-206ENST00000443711 MMP27Q9H306 513 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 PLEKHJ1Q9NW61 149 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 HSF4Q9ULV5 492 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 A3GALT2U3KPV4 340 aa13.1□□□□□ -0.31
USP40-206ENST00000443711 CREBBPQ92793 2442 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 A0A0A6YYH2 397 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 FUOMA2VDF0 154 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 A6NJ64 397 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 FAM157AC9JC47 383 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 HSPB6O14558 160 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 CTDSP2O14595 271 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 RGS5O15539 181 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 PHF1O43189 567 aaPredicted RBP13.09□□□□□ -0.31
USP40-206ENST00000443711 FCN3O75636 299 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 ECDO95905 644 aaPredicted RBP13.09□□□□□ -0.31
USP40-206ENST00000443711 CSN2P05814 226 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 TMEM50BP56557 158 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 ARL6IP1Q15041 203 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 MOGAT2Q3SYC2 334 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 BRICD5Q6PL45 260 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 SPNS3Q6ZMD2 512 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 C6orf201Q7Z4U5 140 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 FGFRL1Q8N441 504 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 BPIFB2Q8N4F0 458 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 MAPK1IP1LQ8NDC0 245 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 H1FXQ92522 213 aaKnown RBP13.09□□□□□ -0.31
USP40-206ENST00000443711 NUDT16L1Q9BRJ7 211 aaKnown RBP13.09□□□□□ -0.31
USP40-206ENST00000443711 C6orf62Q9GZU0 229 aaPredicted RBP13.09□□□□□ -0.31
USP40-206ENST00000443711 ADAM30Q9UKF2 790 aa13.09□□□□□ -0.31
USP40-206ENST00000443711 ARHGAP32A7KAX9 2087 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 LOC105371242A0A075B767 164 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 UBE2QL1A1L167 161 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 A8MXK9 166 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 FAM25AB3EWG3 89 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 FAM25CB3EWG5 89 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 FAM25GB3EWG6 89 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 B4DSR2 109 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 EIF4EP06730 217 aaKnown RBP13.08□□□□□ -0.32
USP40-206ENST00000443711 ELK1P19419 428 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 ZFP36P26651 326 aaKnown RBP13.08□□□□□ -0.32
USP40-206ENST00000443711 ERP29P30040 261 aaKnown RBP13.08□□□□□ -0.32
USP40-206ENST00000443711 GZMKP49863 264 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 LCN2P80188 198 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 ATXN7L3Q14CW9 347 aaPredicted RBP13.08□□□□□ -0.32
USP40-206ENST00000443711 TMEM249Q2WGJ8 235 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 CNPY1Q3B7I2 92 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 BTN2A1Q7KYR7 527 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms