RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 NDUFB11Q9NX14 153 aa9.71□□□□□ -0.86
HSPG2-206ENST00000439717 ST3GAL6Q9Y274 331 aa9.71□□□□□ -0.86
HSPG2-206ENST00000439717 IGHV3OR16-10A0A075B7F0 116 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 IGHV1-69DA0A0B4J2H0 117 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 SLC33A1O00400 549 aaPredicted RBP9.7□□□□□ -0.86
HSPG2-206ENST00000439717 TNFAIP8O95379 198 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 IGHV1-69P01742 117 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 RBP4P02753 201 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 UBBP0CG47 229 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 SERPINA2P20848 420 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 PRTN3P24158 256 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 PSMB9P28065 219 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 RANBP1P43487 201 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 P2RX3P56373 397 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 RBM11P57052 281 aaKnown RBP9.7□□□□□ -0.86
HSPG2-206ENST00000439717 EDDM3AQ14507 147 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 MPV17LQ2QL34 196 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 PIGYQ3MUY2 71 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 SLC22A6Q4U2R8 563 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 C1orf100Q5SVJ3 147 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 AWAT2Q6E213 333 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 CD200R1LQ6Q8B3 271 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 OR4D6Q8NGJ1 314 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 C22orf15Q8WYQ4 148 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 LINC00312Q9Y6C7 94 aa9.7□□□□□ -0.86
HSPG2-206ENST00000439717 TRDV1A0A1B0GX56 115 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 C17orf98A8MV24 154 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 CALRP27797 417 aaKnown RBP9.69□□□□□ -0.86
HSPG2-206ENST00000439717 KCNJ3P48549 501 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 PSMD7P51665 324 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 HILS1P60008 231 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 ERVFRD-1P60508 538 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 ZNF273Q14593 569 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 JMJD1CQ15652 2540 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 SYT6Q5T7P8 510 aaPredicted RBP9.69□□□□□ -0.86
HSPG2-206ENST00000439717 RBMS3Q6XE24 437 aaKnown RBP9.69□□□□□ -0.86
HSPG2-206ENST00000439717 BCL6BQ8N143 479 aaPredicted RBP9.69□□□□□ -0.86
HSPG2-206ENST00000439717 TNFRSF14Q92956 283 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 C1orf147Q96MC9 270 aaPredicted RBP9.69□□□□□ -0.86
HSPG2-206ENST00000439717 PPA2Q9H2U2 334 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 SIRT7Q9NRC8 400 aa9.69□□□□□ -0.86
HSPG2-206ENST00000439717 UBE2J1Q9Y385 318 aaPredicted RBP9.69□□□□□ -0.86
HSPG2-206ENST00000439717 TRAV1-2A0A0B4J238 106 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 TRAV24A0A0B4J272 114 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A10PA6NDY2 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A18PA6NE21 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A16PA6NEW6 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A20PA6NIJ5 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A8PA6NJQ4 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A7PA6NKC0 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A22PA8MWA6 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A12PA8MX19 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A5PA8MXJ8 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A23PA8MXZ1 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 RNASEK-C17orf49H0YIS7 233 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 H3BUI4 141 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 GEMIN2O14893 280 aaKnown RBP9.68□□□□□ -0.86
HSPG2-206ENST00000439717 SLC22A1O15245 554 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A15PP0C7V4 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A13PP0C7W8 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A14PP0C7W9 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 FAM90A24PP0C7X0 464 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 ZNF728P0DKX0 622 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 CCL3L1P16619 93 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 UBE2E1P51965 193 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 DLX6P56179 175 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 PAX5Q02548 391 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 PAN3Q58A45 887 aaKnown RBP9.68□□□□□ -0.86
HSPG2-206ENST00000439717 KRBOX4Q5JUW0 171 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 BRD3OSQ6XYD6 125 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 C11orf42Q8N5U0 333 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 SIGLECL1Q8N7X8 197 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 OR6M1Q8NGM8 313 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 ZFAND2BQ8WV99 257 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 TMEM158Q8WZ71 300 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 CORO2AQ92828 525 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 ZNF714Q96N38 554 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 BARHL1Q9BZE3 327 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 CST11Q9H112 138 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 PRDM13Q9H4Q3 707 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 NCOR1P1Q9H4R4 102 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 HEXA-AS1Q9H8Q6 139 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 SPACA1Q9HBV2 294 aa9.68□□□□□ -0.86
HSPG2-206ENST00000439717 A0A087WXM4 84 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 TRGV10A0A0A0MS01 117 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 A0A1W2PP11 408 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 ODAMA1E959 279 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 SLC17A2O00624 439 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 PDCD5O14737 125 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 CRTAPO75718 401 aaPredicted RBP9.67□□□□□ -0.86
HSPG2-206ENST00000439717 OR7C1O76099 320 aaPredicted RBP9.67□□□□□ -0.86
HSPG2-206ENST00000439717 VENTXO95231 258 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 MGMTP16455 207 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 HTR2CP28335 458 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 AESQ08117 197 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 ATXN7L3Q14CW9 347 aaPredicted RBP9.67□□□□□ -0.86
HSPG2-206ENST00000439717 RUSC1-AS1Q66K80 236 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 TCF23Q7RTU1 214 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 TRAPPC6BQ86SZ2 158 aa9.67□□□□□ -0.86
HSPG2-206ENST00000439717 TPRX1Q8N7U7 411 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms