RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 IGHV2-5P01817 119 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 CDK2P24941 298 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 NPBWR2P48146 333 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 PITPNBP48739 271 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 IKZF1Q13422 519 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 MADCAM1Q13477 382 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 IL13RA2Q14627 380 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 ZNF846Q147U1 533 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 PIGYQ3MUY2 71 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 AWAT1Q58HT5 328 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 NHLRC3Q5JS37 347 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 IZUMO1Q8IYV9 350 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 BOLLQ8N9W6 283 aaKnown RBP10.12□□□□□ -0.79
PTPRF-208ENST00000437607 NICN1Q9BSH3 213 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 TM2D1Q9BX74 207 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 LPAR5Q9H1C0 372 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 GCM1Q9NP62 436 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 RABL2AQ9UBK7 228 aaPredicted RBP10.12□□□□□ -0.79
PTPRF-208ENST00000437607 OPN4Q9UHM6 478 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 GLS2Q9UI32 602 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 RABL2BQ9UNT1 228 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 ST3GAL6Q9Y274 331 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 WIPI2Q9Y4P8 454 aa10.12□□□□□ -0.79
PTPRF-208ENST00000437607 A0A0G2JMP0 313 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 A0A0X1KG70 313 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A10PA6NDY2 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A18PA6NE21 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A16PA6NEW6 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FABP12A6NFH5 140 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A20PA6NIJ5 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A8PA6NJQ4 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A7PA6NKC0 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A22PA8MWA6 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A12PA8MX19 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A5PA8MXJ8 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A23PA8MXZ1 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 H3BUI4 141 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 NOS1APO75052 506 aaPredicted RBP10.11□□□□□ -0.79
PTPRF-208ENST00000437607 OR7C1O76099 320 aaPredicted RBP10.11□□□□□ -0.79
PTPRF-208ENST00000437607 ACAA1P09110 424 aaPredicted RBP10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A15PP0C7V4 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A13PP0C7W8 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A14PP0C7W9 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A24PP0C7X0 464 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 CD80P33681 288 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 CFHR2P36980 270 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 ETV6P41212 452 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 VEGFCP49767 419 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 TAS2R20P59543 309 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 ERVK11-1P61568 191 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 ZNF45Q02386 682 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 ZNF181Q2M3W8 571 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 MPV17LQ2QL34 196 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 TUSC1Q2TAM9 212 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 SPRNQ5BIV9 151 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 SPIN3Q5JUX0 258 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 NKAPLQ5M9Q1 402 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 METAP1DQ6UB28 335 aaPredicted RBP10.11□□□□□ -0.79
PTPRF-208ENST00000437607 ACP7Q6ZNF0 438 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 C11orf53Q8IXP5 236 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 MFSD4AQ8N468 514 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 CHST4Q8NCG5 386 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 OR4M2Q8NGB6 313 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 C15orf40Q8WUR7 153 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 NEDD4LQ96PU5 975 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 NUDT16L1Q9BRJ7 211 aaKnown RBP10.11□□□□□ -0.79
PTPRF-208ENST00000437607 SUCNR1Q9BXA5 334 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 RASL12Q9NYN1 266 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 V9GYH0 126 aa10.11□□□□□ -0.79
PTPRF-208ENST00000437607 GEMIN2O14893 280 aaKnown RBP10.1□□□□□ -0.79
PTPRF-208ENST00000437607 XRCC3O43542 346 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 PDCD6O75340 191 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 CYB5R3P00387 301 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-208ENST00000437607 KNG1P01042 644 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 CHRM2P08172 466 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 ZNF44P15621 663 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 BLVRBP30043 206 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-208ENST00000437607 MNDAP41218 407 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 PITPNAQ00169 270 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 ARL6IP1Q15041 203 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 TAF9Q16594 264 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 HFEQ30201 348 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 DCAF12L2Q5VW00 463 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 PYHIN1Q6K0P9 492 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 FAM90A1Q86YD7 464 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 GCSAMQ8N6F7 178 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 Q8NFD4 153 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 OR10R2Q8NGX6 335 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 C22orf15Q8WYQ4 148 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 CCL17Q92583 94 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 RAB39BQ96DA2 213 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 RAB3CQ96E17 227 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 JMJD8Q96S16 334 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 SPACA1Q9HBV2 294 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 HES4Q9HCC6 221 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 TMEM106BQ9NUM4 274 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 NLKQ9UBE8 527 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 IL36RNQ9UBH0 155 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 OR14J1Q9UGF5 321 aa10.1□□□□□ -0.79
PTPRF-208ENST00000437607 MRPS7Q9Y2R9 242 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms