RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 HNF4GQ14541 408 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 MEPCEQ7L2J0 689 aaKnown RBP13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 DNAAF1Q8NEP3 725 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 HRASLS5Q96KN8 279 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 MNTQ99583 582 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 ZMAT4Q9H898 229 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 HMG20AQ9NP66 347 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 AMMECR1Q9Y4X0 333 aaPredicted RBP13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 J3QR06 171 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 SERPINA3P01011 423 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 CGB3P0DN86 165 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 CGB7P0DN87 165 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 CALCBP10092 127 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 RAB7AP51149 207 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 ATP1B3P54709 279 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 FAM98BQ52LJ0 330 aaKnown RBP13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 ZFAND6Q6FIF0 208 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 PLEKHG7Q6ZR37 379 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 DEFB107AQ8IZN7 70 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 OR8H3Q8N146 312 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 CCDC54Q8NEL0 328 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 C4orf3Q8WVX3 66 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 C10orf35Q96D05 121 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 KIRREL1Q96J84 757 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 TEX12Q9BXU0 123 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 ABCG5Q9H222 651 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 PLEKHA1Q9HB21 404 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 SLC25A19Q9HC21 320 aa13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 EXOSC4Q9NPD3 245 aaKnown RBP13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 MRM2Q9UI43 246 aaKnown RBP13.08□□□□□ -0.32
CHCHD3-202ENST00000423635 PLECQ15149 4684 aaKnown RBP13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 KBTBD11-OT1A0A1B0GTJ5 212 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 SYT7O43581 403 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 LY86O95711 162 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 CYB5AP00167 134 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 IGKV1D-33P01593 117 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 IGKV1-33P01594 117 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 FRMD6-AS1P0C7T7 363 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 GPR12P47775 334 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 RBP2P50120 134 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 DIAPH2-AS1Q14236 149 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 TMEM236Q5W0B7 351 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 C16orf89Q6UX73 402 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 OVCH2Q7RTZ1 564 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 TMEM179BQ7Z7N9 219 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 TGIF2LXQ8IUE1 241 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 COQ2Q96H96 371 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 CNN2Q99439 309 aaKnown RBP13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 COMMD4Q9H0A8 199 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 GSTK1Q9Y2Q3 226 aa13.07□□□□□ -0.32
CHCHD3-202ENST00000423635 NFYBP25208 207 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 SNU13P55769 128 aaKnown RBP13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 CFHR3Q02985 330 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 MADCAM1Q13477 382 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 KRBOX4Q5JUW0 171 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 OR11H1Q8NG94 326 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 HAVCR2Q8TDQ0 301 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 ELAC2Q9BQ52 826 aaKnown RBP13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 LINC00574Q9H8X3 128 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 EDA2RQ9HAV5 297 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 LIN7CQ9NUP9 197 aaKnown RBP13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 NDE1Q9NXR1 346 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 TVP23BQ9NYZ1 205 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 OR6C3Q9NZP0 311 aa13.06□□□□□ -0.32
CHCHD3-202ENST00000423635 CST1P01037 141 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 IGHG4P01861 327 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 PDZK1IP1Q13113 114 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 ODF4Q2M2E3 257 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 FAM27D1Q5T7N8 215 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 ZNF429Q86V71 674 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 CATSPERDQ86XM0 798 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 SLC35F2Q8IXU6 374 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 PP6455Q8WZ26 134 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 ZNF556Q9HAH1 456 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 TAGLN3Q9UI15 199 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 PSG11Q9UQ72 335 aa13.05□□□□□ -0.32
CHCHD3-202ENST00000423635 IGKV1-9A0A0C4DH69 117 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 ZNF670-ZNF695F2Z2N8 137 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 HCKP08631 526 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 RAP2AP10114 183 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 PSMB8P28062 276 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 POU3F4P49335 361 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 MTCP1P56278 107 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 Q6P435 159 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 ADAMTSL5Q6ZMM2 481 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 SLC16A12Q6ZSM3 486 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 DHFR2Q86XF0 187 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 Q8N6K4 173 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 ZNF565Q8N9K5 539 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 Q8N9W7 124 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 CHST4Q8NCG5 386 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 EAF1Q96JC9 268 aaPredicted RBP13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 TM2D3Q9BRN9 247 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 NCOR1P1Q9H4R4 102 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 RHOFQ9HBH0 211 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 ADGRL4Q9HBW9 690 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 KRT84Q9NSB2 600 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 ARGLU1Q9NWB6 273 aaPredicted RBP13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 CLN6Q9NWW5 311 aa13.04□□□□□ -0.32
CHCHD3-202ENST00000423635 IGKV1-12A0A0C4DH73 117 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms