RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PPBPP02775 128 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 GABRA3P34903 492 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR52E5Q8NH55 327 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 IMMP2LQ96T52 175 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NSG2Q9Y328 171 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 FAM166BA8MTA8 275 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 IGHA2P01877 340 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 CLRN1P58418 232 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TCF23Q7RTU1 214 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 Q96M85 177 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 UBE2ZQ9H832 354 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SPCS1Q9Y6A9 102 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TRAV9-2A0A087WT02 112 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 IGHV2-70DA0A0C4DH43 119 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR2T8A6NH00 312 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SERF1AO75920 110 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 WNT11O96014 354 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 APCSP02743 223 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 VASH2Q86V25 355 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR10V1Q8NGI7 309 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 COL25A1Q9BXS0 654 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OBP2BQ9NPH6 170 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 A0A0G2JMM0 328 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 A0A1W2PPB8 328 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KIR3DP1A8MWS1 328 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 HRASP01112 189 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TSPOP30536 169 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PSMB3P49720 205 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KIAA1644Q3SXP7 199 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SCN8AQ9UQD0 1980 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TGFAP01135 160 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF260Q3ZCT1 412 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 DMRTC1Q5HYR2 192 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR51A2Q8NGJ7 313 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SLAMF6Q96DU3 332 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF681Q96N22 645 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RAB18Q9NP72 206 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KLRF1Q9NZS2 232 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF319Q9P2F9 582 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RBFOX2O43251 390 aaKnown RBP eCLIP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RAC3P60763 192 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 YPEL5P62699 121 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SPSB1Q96BD6 273 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SPAARA0A1B0GVQ0 90 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 EFEMP2O95967 443 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 HKR1P10072 659 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 FKBP1BP68106 108 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 C12orf54Q6X4T0 127 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KCNG3Q8TAE7 436 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TFGQ92734 400 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 A6NDN8 102 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ARPC3O15145 178 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF728P0DKX0 622 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PTGER4P35408 488 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZFYVE21Q9BQ24 234 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KCNIP2Q9NS61 270 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 LOC102723971A0A1B0GUV8 181 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 C8AP07357 584 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TRIP12Q14669 1992 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PDGFRLQ15198 375 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR51T1Q8NGJ9 327 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TRAPPC2LQ9UL33 140 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 QSER1Q2KHR3 1735 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MUC21A0A0G2JKD1 596 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MUC21A0A140T8X8 626 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MSTNO14793 375 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 CLDN2P57739 230 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SLC35B1P78383 322 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PNRC1Q12796 327 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MUC21Q5SSG8 566 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TSPO2Q5TGU0 170 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 POC1AQ8NBT0 407 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RNF128Q8TEB7 428 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MRAP2Q96G30 205 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 CALHM2Q9HA72 323 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 HIDE1A8MVS5 230 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SSSCA1O60232 199 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 DAP3P51398 398 aaKnown RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 BSXQ3C1V8 233 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NRN1LQ496H8 165 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 GATSQ8NAP1 163 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NGBQ9NPG2 151 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MED29Q9NX70 200 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF443Q9Y2A4 671 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR1A2Q9Y585 309 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 INSIG2Q9Y5U4 225 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 GVINP1Q7Z2Y8 2422 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 A0A1B0GTI1 187 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 C7orf71A4D174 169 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NBEAP1P0C6P0 100 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ADGRE4PQ86SQ3 457 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR13G1Q8NGZ3 307 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM170AQ8WVE7 144 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF689Q96CS4 500 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 WFDC6Q9BQY6 131 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NRN1Q9NPD7 142 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 JKAMPQ9P055 326 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 APC2O95996 2303 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NDUFB2O95178 105 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 BLNKQ8WV28 456 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms