RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TNXAQ16473 311 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 C20orf196Q8IYI0 205 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 NDUFB6O95139 128 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 MRPS21P82921 87 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 FAM209BQ5JX69 171 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 SLC25A34Q6PIV7 304 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 WNT5BQ9H1J7 359 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 MED19A0JLT2 244 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 KBTBD11O94819 623 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 MEF2CQ06413 473 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 MRGPRX4Q96LA9 322 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 OR3A4PP47883 348 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF880Q6PDB4 577 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 NOXO1Q8NFA2 376 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 LSM10Q969L4 123 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ISG20L2Q9H9L3 353 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 A4GNTQ9UNA3 340 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 GNG3P63215 75 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 DUSP8Q13202 625 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 SLC16A11Q8NCK7 471 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ANAPC13Q9BS18 74 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 CEP290O15078 2479 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 CCR5P51681 352 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 OR1F12Q8NHA8 337 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ISOC2Q96AB3 205 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ICOSLGO75144 302 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 CXorf67Q86X51 503 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 RBKSQ9H477 322 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 FGF21Q9NSA1 209 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 HMGN4O00479 90 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 OR4A8P0C604 315 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 AFMIDQ63HM1 303 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 FAM109BQ6ICB4 259 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 C16orf82Q7Z2V1 217 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF740Q8NDX6 193 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 ALG14Q96F25 216 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 INSM2Q96T92 566 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 HSF4Q9ULV5 492 aa11.91□□□□□ -0.5
CCDC88A-204ENST00000413716 HRO43593 1189 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 MPV17LQ2QL34 196 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 PLPPR5Q32ZL2 321 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 WDTC1Q8N5D0 677 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 OR13C6PQ8NH95 151 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 DOK1Q99704 481 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 ZMIZ1Q9ULJ6 1067 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 SAMD13Q5VXD3 122 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 SPSB1Q96BD6 273 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 RABAC1Q9UI14 185 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 hADV38S2A0JD32 116 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 PPP1R1AQ13522 171 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 TMEM255AQ5JRV8 349 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 OR4C3Q8NH37 302 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 PHLDA3Q9Y5J5 127 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 WNK2Q9Y3S1 2297 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 TMEM272A0A1B0GTI8 110 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 SAPCD1Q5SSQ6 148 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 ZC3H3Q8IXZ2 948 aaKnown RBP11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 HSPB9Q9BQS6 159 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 RAB33BQ9H082 229 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 A0A0B4J293 547 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 F11P03951 625 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 HTR3DQ70Z44 454 aa11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 ERRFI1Q9UJM3 462 aaPredicted RBP11.9□□□□□ -0.5
CCDC88A-204ENST00000413716 IGHV3-15A0A0B4J1V0 119 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 GSG1Q2KHT4 349 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 SLCO4C1Q6ZQN7 724 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 Q7L0L9 218 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 ADAMTS5Q9UNA0 930 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 KCNMB2Q9Y691 235 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 PPM1DO15297 605 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 HYAL1Q12794 435 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC25A30Q5SVS4 291 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 RPS19BP1Q86WX3 136 aaKnown RBP11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 C2orf88Q9BSF0 95 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 MAP1LC3AQ9H492 121 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 CLEC1BQ9P126 229 aa11.9□□□□□ -0.51
CCDC88A-204ENST00000413716 C4AP0C0L4 1744 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 C4BP0C0L5 1744 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 TYMSP04818 313 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 LGALSLQ3ZCW2 172 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 ETFBKMTQ8IXQ9 262 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 DHCR7Q9UBM7 475 aaKnown RBP11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 F5P12259 2224 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 ZAR1LA6NP61 321 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 NGFP01138 241 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 C1SP09871 688 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 ARHGAP5-AS1Q96IT6 56 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 HBZP02008 142 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 PRR14Q9BWN1 585 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 RAB1BQ9H0U4 201 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 HDGFL3Q9Y3E1 203 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 H3BQ15 152 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC25A20O43772 301 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 P2RY1P47900 373 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 DOT1LQ8TEK3 1739 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 FOLR2P14207 255 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 TMEM33P57088 247 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 TM4SF20Q53R12 229 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 PABPC1L2AQ5JQF8 200 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 UBE2FQ969M7 185 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms