RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PNPP00491 289 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 IRF2P14316 349 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SPI1P17947 270 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 KITLGP21583 273 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 CFL1P23528 166 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 TAGLN2P37802 199 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 WNT5AP41221 380 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 CRYBB2P43320 205 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SRP9P49458 86 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 ERVS71-1P61550 626 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 CRMP1Q14194 572 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 GINS1Q14691 196 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 MEP1BQ16820 701 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 KLHL12Q53G59 568 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SLC35D3Q5M8T2 416 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SPSB3Q6PJ21 355 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 DRAM2Q6UX65 266 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 RFPL4BQ6ZWI9 263 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 PGAP1Q75T13 922 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 FTMTQ8N4E7 242 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 KLHDC1Q8N7A1 406 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 OR9Q1Q8NGQ5 310 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SPRYD4Q8WW59 207 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 HAVCR1Q96D42 359 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 CMBLQ96DG6 245 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ZNF799Q96GE5 643 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 NIPSNAP1Q9BPW8 284 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 FUNDC2Q9BWH2 189 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 BEX2Q9BXY8 128 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 PLA2G12AQ9BZM1 189 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 OR51V1Q9H2C8 321 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 FN3KQ9H479 309 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 PLGRKTQ9HBL7 147 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ACOT13Q9NPJ3 140 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 CENPMQ9NSP4 180 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SLC35D1Q9NTN3 355 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 IL19Q9UHD0 177 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 CYB5R1Q9UHQ9 305 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 PSORS1C1Q9UIG5 152 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 PURGQ9UJV8 347 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 LHFPL6Q9Y693 200 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ISPDA4D126 451 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 B4DSR2 109 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 DCTN6O00399 190 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 ZNF593O00488 134 aaPredicted RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 XRCC2O43543 280 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 LMX1BO60663 402 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 GLCEO94923 617 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 TGFAP01135 160 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 NGFP01138 241 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 MT-ND2P03891 347 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 S100A6P06703 90 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 TACSTD2P09758 323 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 PYCR1P32322 319 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 MAGEB1P43366 347 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 GBX2P52951 348 aaPredicted RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 CRISP1P54107 249 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 HIST1H3AP68431 136 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 EIF2B1Q14232 305 aaKnown RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 TEX30Q5JUR7 227 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 HIST2H3PS2Q5TEC6 136 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 UBE2UQ5VVX9 321 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 FBXW12Q6X9E4 464 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 AHSA2Q719I0 299 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 HIST2H3AQ71DI3 136 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 DCXRQ7Z4W1 244 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 ZNF283Q8N7M2 679 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 OR2Z1Q8NG97 314 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 OR6N2Q8NGY6 317 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 ST7LQ8TDW4 575 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 APH1BQ8WW43 257 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 TRUB1Q8WWH5 349 aaKnown RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 CCL17Q92583 94 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 FAM71F1Q96KD3 344 aaPredicted RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 SGK494Q96LW2 274 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 Q96MT0 163 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 NAA50Q9GZZ1 169 aaKnown RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 PALMDQ9NP74 551 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 ZNF275Q9NSD4 429 aaPredicted RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 TMEM100Q9NV29 134 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 FKBP14Q9NWM8 211 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 PTTG3PQ9NZH4 202 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 CNOT2Q9NZN8 540 aaKnown RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 MYEF2Q9P2K5 600 aaKnown RBP5.24□□□□□ -1.57
USP40-202ENST00000409945 ERVK-18Q9QC07 812 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 STARD10Q9Y365 291 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 TMEM14AQ9Y6G1 99 aa5.24□□□□□ -1.57
USP40-202ENST00000409945 TLN2Q9Y4G6 2542 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 A0A1W2PS18 150 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 EFCAB10A6NFE3 127 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 GGT3PA6NGU5 568 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 TVP23AA6NH52 213 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 CLPXO76031 633 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 FADS2O95864 444 aaKnown RBP5.23□□□□□ -1.57
USP40-202ENST00000409945 GYPBP06028 91 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 CDK1P06493 297 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 IGFBP1P08833 259 aaPredicted RBP5.23□□□□□ -1.57
USP40-202ENST00000409945 H2BFMP0C1H6 154 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 FRMD6-AS1P0C7T7 363 aa5.23□□□□□ -1.57
USP40-202ENST00000409945 PSMB9P28065 219 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms