RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PRSS54Q6PEW0 395 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF721Q8TF20 911 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 EMG1Q92979 244 aaKnown RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 GPX7Q96SL4 187 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 PITPNC1Q9UKF7 332 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 IGHV1OR15-9A0A0B4J2B8 117 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 LRP5LA4QPB2 252 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 H3BQ15 152 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 HOXC4P09017 264 aaPredicted RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 OR5AC1P0C628 307 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 IL2RGP31785 369 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 LPAR6P43657 344 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 CXCL12P48061 93 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 RIPPLY3P57055 190 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 RANP62826 216 aaKnown RBP10.49□□□□□ -0.73
HMGB1-206ENST00000405805 Q7L0L9 218 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 DTWD2Q8NBA8 298 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF738Q8NE65 137 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 GJC3Q8NFK1 279 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 LIPGQ9Y5X9 500 aa10.49□□□□□ -0.73
HMGB1-206ENST00000405805 KIAA2026Q5HYC2 2103 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 A0A096LPE4 126 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 A0A1W2PPZ6 126 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 OR8U8P0C7N1 319 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ENDOGQ14249 297 aaKnown RBP10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SLC16A14Q7RTX9 510 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 C1QL2Q7Z5L3 287 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ARRDC1Q8N5I2 433 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 APH1AQ96BI3 265 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 FAM122AQ96E09 287 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 NUDT11Q96G61 164 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 PHF7Q9BWX1 381 aaPredicted RBP10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF318Q5VUA4 2279 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ST8SIA3O43173 380 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 RAMP1O60894 148 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 MT-CO2P00403 227 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 NPSP0C0P6 89 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ACKR3P25106 362 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 LYZL2Q7Z4W2 148 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 IL22RA1Q8N6P7 574 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 APCDD1LQ8NCL9 501 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ASB10Q8WXI3 467 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 LPAR5Q9H1C0 372 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 UBE2ZQ9H832 354 aaPredicted RBP10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF430Q9H8G1 570 aaPredicted RBP10.48□□□□□ -0.73
HMGB1-206ENST00000405805 TMEM9BQ9NQ34 198 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 PLXNB3Q9ULL4 1909 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SHANK1Q9Y566 2161 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF816-ZNF321PA0A0X1KG74 233 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 FAM24AA6NFZ4 105 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 HMGB3O15347 200 aaKnown RBP10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SPINK4O60575 86 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SERPINE2P07093 398 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 GSTP1P09211 210 aaKnown RBP10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SRFP11831 508 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 KLK2P20151 261 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 PRRX1P54821 245 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 TRA2AQ13595 282 aaKnown RBP eCLIP10.48□□□□□ -0.733e-6■■■■□ 20.9
HMGB1-206ENST00000405805 ZNF684Q5T5D7 378 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SLC39A7Q92504 469 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 UCN2Q96RP3 112 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 TMEM208Q9BTX3 173 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 C5orf66Q9H5L9 145 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 GCM1Q9NP62 436 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 SLC39A9Q9NUM3 307 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 MYO7BQ6PIF6 2116 aa10.48□□□□□ -0.73
HMGB1-206ENST00000405805 MSTNO14793 375 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 EREGO14944 169 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 DCDP81605 110 aaKnown RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 RABEPKQ7Z6M1 372 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 RDH5Q92781 318 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 MS4A18H0YCH9 400 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 HS3ST1O14792 307 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 CBR3O75828 277 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 HBE1P02100 147 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 CCL2P13500 99 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 EFNA3P52797 238 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 MS4A18Q3C1V0 323 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 LRRC75AQ8NAA5 344 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 EDAQ92838 391 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 SCARF2Q96GP6 870 aaPredicted RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 PLK3Q9H4B4 646 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF286AQ9HBT8 521 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 ST3GAL6Q9Y274 331 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 SCGB2A1O75556 95 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 CD1AP06126 327 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 HOXA5P20719 270 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 APLNRP35414 380 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 MMP16P51512 607 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 SLC25A26Q70HW3 274 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 M1APQ8TC57 530 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 RPS4Y2Q8TD47 263 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 RNF133Q8WVZ7 376 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 NANOS1Q8WY41 292 aaKnown RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 ALKBH7Q9BT30 221 aaPredicted RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 AKIRIN1Q9H9L7 192 aaPredicted RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 G6PC2Q9NQR9 355 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 WNT16Q9UBV4 365 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 IL19Q9UHD0 177 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 TP53TG5Q9Y2B4 290 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms