RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 POLR3KQ9Y2Y1 108 aaPredicted RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 CEACAM18A8MTB9 384 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 FOXI3A8MTJ6 420 aaPredicted RBP7.62□□□□□ -1.19
VPS53-203ENST00000401468 ZNF737O75373 536 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 NXPH2O95156 264 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 VENTXO95231 258 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 PLATP00750 562 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 IGHV2-5P01817 119 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 CALCBP10092 127 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 HNF1AP20823 631 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 LCN2P80188 198 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 RSU1Q15404 277 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 FOXB2Q5VYV0 432 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 AWAT2Q6E213 333 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 SFRP4Q6FHJ7 346 aaPredicted RBP7.62□□□□□ -1.19
VPS53-203ENST00000401468 Q6P435 159 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 GLCCI1Q86VQ1 547 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 OSR2Q8N2R0 312 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 SPICQ8N5J4 248 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 TMEM104Q8NE00 496 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 KCNG3Q8TAE7 436 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 TAF15Q92804 592 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS53-203ENST00000401468 EMG1Q92979 244 aaKnown RBP7.62□□□□□ -1.19
VPS53-203ENST00000401468 FAM3DQ96BQ1 224 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 SEH1LQ96EE3 360 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 GAFA1Q96PS6 74 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 DCSTAMPQ9H295 470 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 PATZ1Q9HBE1 687 aaKnown RBP7.62□□□□□ -1.19
VPS53-203ENST00000401468 PLGRKTQ9HBL7 147 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 TMEM160Q9NX00 188 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 RCC2Q9P258 522 aaKnown RBP7.62□□□□□ -1.19
VPS53-203ENST00000401468 IL36RNQ9UBH0 155 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 CTSZQ9UBR2 303 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 LPAR3Q9UBY5 353 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 OR5V1Q9UGF6 321 aa7.62□□□□□ -1.19
VPS53-203ENST00000401468 TMEM272A0A1B0GTI8 110 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 A0A1W2PP11 408 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 A8MXK9 166 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 SIGLEC5O15389 551 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 MSMBP08118 114 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 WNT2P09544 360 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 SLC2A2P11168 524 aaPredicted RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 GTF2F2P13984 249 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 ARSBP15848 533 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 MGMTP16455 207 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 SERPINB10P48595 397 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 CAV3P56539 151 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 SEC61A1P61619 476 aaKnown RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 RPS27AP62979 156 aaKnown RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 MXD1Q05195 221 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 MPV17LQ2QL34 196 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 C2orf76Q3KRA6 126 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 SLC22A6Q4U2R8 563 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 HES5Q5TA89 166 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 ZNF561Q8N587 486 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 CD177Q8N6Q3 437 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 CHST4Q8NCG5 386 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 C19orf18Q8NEA5 215 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 OR51D1Q8NGF3 324 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 OR10K1Q8NGX5 313 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 DACT3Q96B18 629 aaPredicted RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 TMEM186Q96B77 213 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 DGCR14Q96DF8 476 aaKnown RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 DUX5Q96PT3 197 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 CITED4Q96RK1 184 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 S100A13Q99584 98 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 FAM192AQ9GZU8 254 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 FAM234AQ9H0X4 552 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 CST11Q9H112 138 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 LPAR5Q9H1C0 372 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 ZNF665Q9H7R5 613 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 CCDC59Q9P031 241 aaKnown RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 ABRACLQ9P1F3 81 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 DNAJB11Q9UBS4 358 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 MIOXQ9UGB7 285 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 RSL24D1Q9UHA3 163 aaKnown RBP7.61□□□□□ -1.19
VPS53-203ENST00000401468 DAPK2Q9UIK4 370 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 SPATA2Q9UM82 520 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 MAB21L2Q9Y586 359 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 ETV7Q9Y603 341 aa7.61□□□□□ -1.19
VPS53-203ENST00000401468 IGHV3OR15-7A0A075B7D8 119 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 IGHV3OR16-10A0A075B7F0 116 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 A0A0A6YYD4 124 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 TMEM238LA0A1B0GVL6 79 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 RFPL4AA6NLU0 287 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 B4DSR2 109 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 RFPL4AL1F8VTS6 287 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 K7N7A8 449 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 HTR3BO95264 441 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 HAND1O96004 215 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 GYPAP02724 150 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 CSTBP04080 98 aaKnown RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 CSN2P05814 226 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 GLAP06280 429 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 PRKACAP17612 351 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 SERPINA2P20848 420 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 PRDX2P32119 198 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 NPY4RP50391 375 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 RORCP51449 518 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 DVL1P1P54792 670 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms