RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SAXO1Q8IYX7 474 aa23.15■■□□□ 1.3
HMGB1-205ENST00000399494 ASCC1Q8N9N2 400 aaKnown RBP23.15■■□□□ 1.3
HMGB1-205ENST00000399494 ORAI1Q96D31 301 aa23.15■■□□□ 1.3
HMGB1-205ENST00000399494 FAM234AQ9H0X4 552 aa23.15■■□□□ 1.3
HMGB1-205ENST00000399494 FOXJ3Q9UPW0 622 aa23.15■■□□□ 1.3
HMGB1-205ENST00000399494 LSM2Q9Y333 95 aaKnown RBP23.15■■□□□ 1.3
HMGB1-205ENST00000399494 OPN1MWP04001 364 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 OPN1MW2P0DN77 364 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 OPN1MW3P0DN78 364 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 CALCBP10092 127 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 SNU13P55769 128 aaKnown RBP23.14■■□□□ 1.29
HMGB1-205ENST00000399494 LY6EQ16553 131 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 KPRPQ5T749 579 aaPredicted RBP23.14■■□□□ 1.29
HMGB1-205ENST00000399494 OR52N4Q8NGI2 321 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 OR5D13Q8NGL4 314 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 CFHR4Q92496 578 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 THRSPQ92748 146 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 FAM192AQ9GZU8 254 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 TMEM138Q9NPI0 162 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 GLS2Q9UI32 602 aa23.14■■□□□ 1.29
HMGB1-205ENST00000399494 CHRM2P08172 466 aa23.13■■□□□ 1.29
HMGB1-205ENST00000399494 BDKRB2P30411 391 aa23.13■■□□□ 1.29
HMGB1-205ENST00000399494 COL10A1Q03692 680 aa23.13■■□□□ 1.29
HMGB1-205ENST00000399494 DDI2Q5TDH0 399 aa23.13■■□□□ 1.29
HMGB1-205ENST00000399494 SAMD5Q5TGI4 173 aa23.13■■□□□ 1.29
HMGB1-205ENST00000399494 C11orf88Q6PI97 169 aa23.13■■□□□ 1.29
HMGB1-205ENST00000399494 IGKV1-12A0A0C4DH73 117 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 A0A1W2PPK0 400 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 KDM4BO94953 1096 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 HAND1O96004 215 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 IGKV1D-12P01611 117 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 ALDOBP05062 364 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 HSMCR30P0CW71 290 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 MAPK3P27361 379 aaPredicted RBP23.12■■□□□ 1.29
HMGB1-205ENST00000399494 ZP1P60852 638 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 SPIN3Q5JUX0 258 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 FAM185AQ8N0U4 392 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 C11orf44Q8N8P7 122 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 TNFAIP8L1Q8WVP5 186 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 RHOFQ9HBH0 211 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 HMG20AQ9NP66 347 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 IL36RNQ9UBH0 155 aa23.12■■□□□ 1.29
HMGB1-205ENST00000399494 TRBV23-1A0A0A0MS06 115 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 GABRPO00591 440 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 DENRO43583 198 aaKnown RBP23.11■■□□□ 1.29
HMGB1-205ENST00000399494 TK1P04183 234 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 AANATQ16613 207 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 LRRC75BQ2VPJ9 315 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 OR4C13Q8NGP0 309 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 UFD1Q92890 307 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 DERL3Q96Q80 235 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 TMED9Q9BVK6 235 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 GSTK1Q9Y2Q3 226 aa23.11■■□□□ 1.29
HMGB1-205ENST00000399494 MEGF11A6BM72 1044 aa23.1■■□□□ 1.29
HMGB1-205ENST00000399494 FSTP19883 344 aa23.1■■□□□ 1.29
HMGB1-205ENST00000399494 PAX6P26367 422 aa23.1■■□□□ 1.29
HMGB1-205ENST00000399494 DUSP1P28562 367 aa23.1■■□□□ 1.29
HMGB1-205ENST00000399494 ZNF93P35789 620 aaPredicted RBP23.1■■□□□ 1.29
HMGB1-205ENST00000399494 MS4A15Q8N5U1 240 aa23.1■■□□□ 1.29
HMGB1-205ENST00000399494 RANBP3Q9H6Z4 567 aaPredicted RBP23.1■■□□□ 1.29
HMGB1-205ENST00000399494 TRBV5-7A0A0A0MS05 114 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 IGFBP3P17936 291 aaPredicted RBP23.09■■□□□ 1.29
HMGB1-205ENST00000399494 C11orf42Q8N5U0 333 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 KLHDC1Q8N7A1 406 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 PXT1Q8NFP0 134 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 OR2T6Q8NHC8 308 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 PIFOQ8TCI5 191 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 S100A13Q99584 98 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 EXOSC4Q9NPD3 245 aaKnown RBP23.09■■□□□ 1.29
HMGB1-205ENST00000399494 C19orf12Q9NSK7 152 aa23.09■■□□□ 1.29
HMGB1-205ENST00000399494 PLXNB1O43157 2135 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 TRAV8-7A0A075B6U6 113 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 K7N7A8 449 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 SH2D1BO14796 132 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 GPX5O75715 221 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 PRB2P02812 416 aaPredicted RBP23.08■■□□□ 1.29
HMGB1-205ENST00000399494 GABRR1P24046 479 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 MAP2K4P45985 399 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 GABARAPL2P60520 117 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 RPL31P62899 125 aaKnown RBP23.08■■□□□ 1.29
HMGB1-205ENST00000399494 GPR50Q13585 617 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 ZNF146Q15072 292 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 RSU1Q15404 277 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 LIPKQ5VXJ0 399 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 GDPD3Q7L5L3 318 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 NKX3-1Q99801 234 aaPredicted RBP23.08■■□□□ 1.29
HMGB1-205ENST00000399494 RAB18Q9NP72 206 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 DSCAML1Q8TD84 2053 aa23.08■■□□□ 1.29
HMGB1-205ENST00000399494 MAS1P04201 325 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 OR3A4PP47883 348 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 MTNR1BP49286 362 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 BMXP51813 675 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 OR4M1Q8NGD0 313 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 SNX22Q96L94 193 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 HEXA-AS1Q9H8Q6 139 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 SEBOXQ9HB31 216 aaPredicted RBP23.07■■□□□ 1.28
HMGB1-205ENST00000399494 ISYNA1Q9NPH2 558 aa23.07■■□□□ 1.28
HMGB1-205ENST00000399494 A0A1W2PPH5 198 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 SIRPB1O00241 398 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 ZNF737O75373 536 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms