RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 OXA1LQ15070 435 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 SLC9A3R2Q15599 337 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 TIMM50Q3ZCQ8 353 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 SAXO1Q8IYX7 474 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 OR52N4Q8NGI2 321 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 DCSTAMPQ9H295 470 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 MMP27Q9H306 513 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 DAPK2Q9UIK4 370 aa12.96□□□□□ -0.33
CLN3-201ENST00000333496 SNU13P55769 128 aaKnown RBP12.95□□□□□ -0.34
CLN3-201ENST00000333496 ERVFRD-1P60508 538 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 YIF1BQ5BJH7 314 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 HCP5Q6MZN7 132 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 OR8H2Q8N162 312 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 ZSCAN4Q8NAM6 433 aaPredicted RBP12.95□□□□□ -0.34
CLN3-201ENST00000333496 MCFD2Q8NI22 146 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 SNX22Q96L94 193 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 NKX3-1Q99801 234 aaPredicted RBP12.95□□□□□ -0.34
CLN3-201ENST00000333496 METTL8Q9H825 291 aaKnown RBP12.95□□□□□ -0.34
CLN3-201ENST00000333496 NEK6Q9HC98 313 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 A0A0U1RQK1 487 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 GABRPO00591 440 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 TMEM225BP0DP42 221 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 CCL3L1P16619 93 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 IGFBP3P17936 291 aaPredicted RBP12.95□□□□□ -0.34
CLN3-201ENST00000333496 CELP19835 753 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 TAS2R43P59537 309 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 Q499Y3 187 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 SPIN3Q5JUX0 258 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 FIP1L1Q6UN15 594 aaKnown RBP12.95□□□□□ -0.34
CLN3-201ENST00000333496 Q6YL49 198 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 CHST6Q9GZX3 395 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 GSTK1Q9Y2Q3 226 aa12.95□□□□□ -0.34
CLN3-201ENST00000333496 MEX3AA1L020 520 aaKnown RBP12.94□□□□□ -0.34
CLN3-201ENST00000333496 CLDN34H7C241 214 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 HOXA3O43365 443 aaPredicted RBP12.94□□□□□ -0.34
CLN3-201ENST00000333496 ALDOBP05062 364 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 DLX6P56179 175 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 MLLT11Q13015 90 aaPredicted RBP12.94□□□□□ -0.34
CLN3-201ENST00000333496 TCF23Q7RTU1 214 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 PNKDQ8N490 385 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 PXT1Q8NFP0 134 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 OR4S1Q8NGB4 309 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 RHOFQ9HBH0 211 aa12.94□□□□□ -0.34
CLN3-201ENST00000333496 A0A1W2PRD5 423 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 A0A1W2PRF3 423 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 A0A1W2PRM7 423 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 TMEM89A2RUT3 159 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 GPX5O75715 221 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 OR2H2O95918 312 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 CD1AP06126 327 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 RNASE1P07998 156 aaKnown RBP12.93□□□□□ -0.34
CLN3-201ENST00000333496 MELTFP08582 738 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 GADD45AP24522 165 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 PPP5CP53041 499 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 EDDM3BP56851 147 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 ACTG1P63261 375 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 GUCA2AQ02747 115 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 ACSM1Q08AH1 577 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 Q6P435 159 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 GDPD3Q7L5L3 318 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 TPRX1Q8N7U7 411 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 OR5D13Q8NGL4 314 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 ZDHHC16Q969W1 377 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 OR14A2Q96R54 314 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 GPER1Q99527 375 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 NXF2Q9GZY0 626 aaKnown RBP12.93□□□□□ -0.34
CLN3-201ENST00000333496 ISYNA1Q9NPH2 558 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 NOX4Q9NPH5 578 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 TMEM138Q9NPI0 162 aa12.93□□□□□ -0.34
CLN3-201ENST00000333496 TRAV8-7A0A075B6U6 113 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 TRBV5-7A0A0A0MS05 114 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 A0A1W2PPK0 400 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 SIRPB1O00241 398 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 CCRL2O00421 344 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 SH2D1BO14796 132 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 NPFFO15130 113 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 GABRR1P24046 479 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 LMO1P25800 156 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 OR3A1P47881 315 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 PSMD7P51665 324 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 UBE2E1P51965 193 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 EDDM3AQ14507 147 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 GRK1Q15835 563 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 SSX1Q16384 188 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 ELP2Q6IA86 826 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 ASCL4Q6XD76 172 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 SLC25A28Q96A46 364 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 ZMAT3Q9HA38 289 aaKnown RBP12.92□□□□□ -0.34
CLN3-201ENST00000333496 EXOSC4Q9NPD3 245 aaKnown RBP12.92□□□□□ -0.34
CLN3-201ENST00000333496 TENM1Q9UKZ4 2725 aa12.92□□□□□ -0.34
CLN3-201ENST00000333496 C17orf98A8MV24 154 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 PIN1P1O15428 100 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 BDKRB2P30411 391 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 OR3A4PP47883 348 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 PPP3R1P63098 170 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 BDH1Q02338 343 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 DDI2Q5TDH0 399 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 NCR3LG1Q68D85 454 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 Q8NFD4 153 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 TNFAIP8L1Q8WVP5 186 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms