RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZNF273Q14593 569 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 ATXN7L3Q14CW9 347 aaPredicted RBP13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 PAN3Q58A45 887 aaKnown RBP13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 LINC00596Q86U02 117 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 TMEM104Q8NE00 496 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 OR6M1Q8NGM8 313 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 LHX4Q969G2 390 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 KCNK15Q9H427 330 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 SIRT7Q9NRC8 400 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 TXNL4BQ9NX01 149 aaKnown RBP13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 ZNF581Q9P0T4 197 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 GHRLQ9UBU3 117 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 C2CD3Q4AC94 2353 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 CUBNO60494 3623 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 TRAV1-2A0A0B4J238 106 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 TRAV24A0A0B4J272 114 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 SHISA3A0PJX4 238 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 M0R1W7 72 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 PDCD5O14737 125 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 SLC22A1O15245 554 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 IFNA2P01563 188 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 CCL3L1P16619 93 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 GADD45AP24522 165 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 FGF9P31371 208 aaPredicted RBP13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 P2RX3P56373 397 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 PRB3Q04118 309 aaPredicted RBP13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 AESQ08117 197 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 BLMHQ13867 455 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 P2RY14Q15391 338 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 RAB11BQ15907 218 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 TAF9Q16594 264 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 MPV17LQ2QL34 196 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 GPR157Q5UAW9 335 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 METAP1DQ6UB28 335 aaPredicted RBP13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 PRIMA1Q86XR5 153 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 PDZD9Q8IXQ8 264 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 Q8N7P7 452 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 C22orf15Q8WYQ4 148 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 MRPS24Q96EL2 167 aaKnown RBP13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 CHCHD6Q9BRQ6 235 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 SELENOIQ9C0D9 397 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 CST11Q9H112 138 aa13.06□□□□□ -0.32
CCDC28A-201ENST00000332797 LOC100506127A0A0U1RQW1 187 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 hADV38S2A0JD32 116 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 TRIM64CA6NLI5 447 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 SLC17A2O00624 439 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 CSN2P05814 226 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 CD37P11049 281 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 DLX1P56177 255 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 OR10A3P58181 314 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 MEF2CQ06413 473 aaPredicted RBP13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 ATAD3CQ5T2N8 411 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 OR10K2Q6IF99 312 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 BPIFB2Q8N4F0 458 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 SUMF2Q8NBJ7 301 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 DPCDQ9BVM2 203 aaPredicted RBP13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 OCEL1Q9H607 264 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 IFT22Q9H7X7 185 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 ZNF69Q9UC07 566 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 V9GY05 133 aa13.05□□□□□ -0.32
CCDC28A-201ENST00000332797 CENPVL3A0A0U1RRI6 287 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 FUOMA2VDF0 154 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 BPNT1O95861 308 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 MPIG6BO95866 241 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 SMIM18P0DKX4 95 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 VSIG8P0DPA2 414 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 JUNBP17275 347 aaPredicted RBP13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 RAB3BP20337 219 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 ERP29P30040 261 aaKnown RBP13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 GLIPR1P48060 266 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 PSMD7P51665 324 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 KLRD1Q13241 179 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 KRBOX4Q5JUW0 171 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 HES5Q5TA89 166 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 BRD3OSQ6XYD6 125 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 TCF23Q7RTU1 214 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 TRAPPC6BQ86SZ2 158 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 SLC25A28Q96A46 364 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 COQ2Q96H96 371 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 Q96M66 194 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 SLC6A7Q99884 636 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 MS4A7Q9GZW8 240 aaPredicted RBP13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 METTL8Q9H825 291 aaKnown RBP13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 SMIM30A4D0T7 59 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 ARSBP15848 533 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 FPR2P25090 351 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 CLDN12P56749 244 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 RUSC1-AS1Q66K80 236 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 C1orf122Q6ZSJ8 110 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 KCNG3Q8TAE7 436 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 NEK7Q8TDX7 302 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 KCTD7Q96MP8 289 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 ZNF714Q96N38 554 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 TMEM59Q9BXS4 323 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 LINC00312Q9Y6C7 94 aa13.04□□□□□ -0.32
CCDC28A-201ENST00000332797 JMJD1CQ15652 2540 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 TRGV10A0A0A0MS01 117 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 hCG_1809904A0A1W2PP81 198 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 A0A1W2PPE2 198 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 A0A1W2PR64 198 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms