RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C5orf17Q8NAS9 161 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 OR2W1Q9Y3N9 320 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 CYB5R3P00387 301 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-201ENST00000328333 UQCRFS1P47985 274 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 SNRNP40Q96DI7 357 aaKnown RBP12.74□□□□□ -0.37
COL7A1-201ENST00000328333 IER2Q9BTL4 223 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 TMEFF2Q9UIK5 374 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-201ENST00000328333 ZBTB42B2RXF5 422 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 LBX1P52954 281 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 RAB32Q13637 225 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 FAM209AQ5JX71 171 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 TRDCB7Z8K6 153 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 CA11O75493 328 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 POU2F2P09086 479 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 MMP16P51512 607 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 HSD17B10Q99714 261 aaKnown RBP12.73□□□□□ -0.37
COL7A1-201ENST00000328333 DDA1Q9BW61 102 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 ALX4Q9H161 411 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-201ENST00000328333 M0R296 226 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 CCR2P41597 374 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 DYNLT3P51808 116 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 NTHL1P78549 312 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 GLCCI1Q86VQ1 547 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 IDSB3KWA1 339 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 ASTLQ6HA08 431 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-201ENST00000328333 SCN10AQ9Y5Y9 1956 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 LINC00615Q96LM1 132 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-201ENST00000328333 HHIPQ96QV1 700 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 RSRP1Q9BUV0 290 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 SIGLEC7Q9Y286 467 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 CIRBPQ14011 172 aaKnown RBP12.73□□□□□ -0.37
COL7A1-201ENST00000328333 SPATA45Q537H7 98 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 TMEM207Q6UWW9 146 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 FBXL14Q8N1E6 418 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 OR4C12Q96R67 309 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 VN1R1Q9GZP7 353 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 C12orf49Q9H741 205 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 TCRBV5S1A1TA0A578 114 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 ERV3-1Q14264 604 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 P2RX4Q99571 388 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 MMP25Q9NPA2 562 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 SBF1O95248 1867 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 A0A0A6YYD5 115 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 NPBWR2P48146 333 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 DSCR4P56555 118 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-201ENST00000328333 PRDX4Q13162 271 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 NKAIN2Q5VXU1 208 aa12.73□□□□□ -0.37
COL7A1-201ENST00000328333 P4HTMQ9NXG6 502 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 DOK5Q9P104 306 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 MEF2BQ02080 365 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 ACSM6Q6P461 480 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 WDFY1Q8IWB7 410 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 DNAJC25-GNG10A0A024R161 153 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 TMPRSS11DO60235 418 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 Q56UQ5 140 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 MARF1Q9Y4F3 1742 aaKnown RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 ONECUT2O95948 504 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 IL2RAP01589 272 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 B4GALT1P15291 398 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 NT5CQ8TCD5 201 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 G3V3Y1 287 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 HBZP02008 142 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 TCL1AP56279 114 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 C10orf126Q8N4M7 172 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 SLC52A3Q9NQ40 469 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 ADAMTS5Q9UNA0 930 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 ARSAP15289 507 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 NPY1RP25929 384 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 KIR2DL1P43626 348 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 KIR2DL2P43627 348 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 CST9Q5W186 159 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 TBX15Q96SF7 602 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 PRNDQ9UKY0 176 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 A8MWL6 223 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 RPL34P49207 117 aaKnown RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 CSNK1EP49674 416 aaKnown RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 TMEM136Q6ZRR5 245 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 OR5R1Q8NH85 324 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 GUCD1Q96NT3 240 aa12.72□□□□□ -0.37
COL7A1-201ENST00000328333 MYOZ1Q9NP98 299 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 ELF5Q9UKW6 265 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-201ENST00000328333 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 PQLC2LA1A4F0 135 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 ZC3H12DA2A288 527 aaKnown RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 RBP4P02753 201 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 ZNF865P0CJ78 1059 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 RAB9AP51151 201 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 MRGPREQ86SM8 312 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 RBM14Q96PK6 669 aaKnown RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 OR5AC2Q9NZP5 309 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 SLC25A34Q6PIV7 304 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 PLEKHB1Q9UF11 243 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 TSC2P49815 1807 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 TRBV5-4A0A0C4DH59 114 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 NCMAPQ5T1S8 102 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 VN1R2Q8NFZ6 395 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 OR8A1Q8NGG7 326 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 EMC6Q9BV81 110 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 KHDC1LQ5JSQ8 128 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 CYB5R2Q6BCY4 276 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms