RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FAM90A13PP0C7W8 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A14PP0C7W9 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A24PP0C7X0 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 PDZK1IP1Q13113 114 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 RBM39Q14498 530 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAHD1Q6P587 224 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 BAIAP2L2Q6UXY1 529 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 UTS2BQ765I0 119 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 BCDIN3DQ7Z5W3 292 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 ZNF329Q86UD4 541 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 TCEANCQ8N8B7 351 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 KLHL30-AS1Q8NEE0 82 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 OR9G1Q8NH87 305 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 TOMM40LQ969M1 308 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 SPSB1Q96BD6 273 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 THTPAQ9BU02 230 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 COMMD4Q9H0A8 199 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM53CQ9NYF3 392 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 OR6C3Q9NZP0 311 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 WARS2Q9UGM6 360 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 GSTK1Q9Y2Q3 226 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 SERPINE3A8MV23 424 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 FKBP6O75344 327 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 GLIPR1P48060 266 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 DAPP51397 102 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 AESQ08117 197 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 TMEM244Q5VVB8 128 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 C8orf86Q6ZUL3 223 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 ZNF695Q8IW36 515 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 FOXRED2Q8IWF2 684 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 NEK6Q9HC98 313 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 ENOPH1Q9UHY7 261 aa11.69□□□□□ -0.54
CCDC88B-201ENST00000301897 A0A1W2PQL4 384 aaPredicted RBP11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM172BPA6NC97 362 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 H3BSH0 61 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 SNRNP70P08621 437 aaKnown RBP11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 OCM2P0CE71 109 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 OCMP0CE72 109 aaPredicted RBP11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 ZNF44P15621 663 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 ZNF20P17024 532 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 RAB7AP51149 207 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 SNU13P55769 128 aaKnown RBP11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 HES1Q14469 280 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 KRBOX4Q5JUW0 171 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 SSX6Q7RTT6 188 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM220AQ7Z4H9 259 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 SPATA24Q86W54 205 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 SAXO1Q8IYX7 474 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 OR8H3Q8N146 312 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 C5orf56Q8N8D9 126 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 TFAP2CQ92754 450 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 HRASLS5Q96KN8 279 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 TBX5Q99593 518 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 GON7Q9BXV9 100 aa11.68□□□□□ -0.54
CCDC88B-201ENST00000301897 KBTBD11-OT1A0A1B0GTJ5 212 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 TCRBV3S1A0A5B6 114 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 ZAR1LA6NP61 321 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 CCL24O00175 119 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 KDM4BO94953 1096 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 IGHG2P01859 326 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 TMEM11P17152 192 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 ATF1P18846 271 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 NFYBP25208 207 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 GDNFP39905 211 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 BNIP1Q12981 228 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 MADCAM1Q13477 382 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 FLOT2Q14254 428 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 C12orf73Q69YU5 71 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 TEX38Q6PEX7 206 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 SLC35E3Q7Z769 313 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 ZNF565Q8N9K5 539 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 HAVCR2Q8TDQ0 301 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 NOL4LQ96MY1 436 aaPredicted RBP11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 OPALINQ96PE5 141 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 NCOR1P1Q9H4R4 102 aa11.67□□□□□ -0.54
CCDC88B-201ENST00000301897 IGKV1-9A0A0C4DH69 117 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 J3QR06 171 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 M0R129 80 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 MT-ND2P03891 347 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 CALCBP10092 127 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 HTR1FP30939 366 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 ATP6V1E1P36543 226 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 SCN1BQ07699 218 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 TMED1Q13445 227 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 C9orf66Q5T8R8 295 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 SLC16A12Q6ZSM3 486 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 PRSS35Q8N3Z0 413 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 OR10H4Q8NGA5 316 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 OR5M8Q8NGP6 311 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 OR8U1Q8NH10 309 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 OR56B4Q8NH76 319 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 UTP4Q969X6 686 aaKnown RBP11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 ADAT3Q96EY9 351 aaPredicted RBP11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 COQ2Q96H96 371 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 KIRREL1Q96J84 757 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 IL4I1Q96RQ9 567 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 LSM4Q9Y4Z0 139 aaKnown RBP11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 SIRT4Q9Y6E7 314 aaPredicted RBP11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 SORL1Q92673 2214 aa11.66□□□□□ -0.54
CCDC88B-201ENST00000301897 AP4M1O00189 453 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms