RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TCL1AP56279 114 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 ZNF154Q13106 437 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 CARFQ8N187 725 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 R3HDM4Q96D70 268 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 TOLLIPQ9H0E2 274 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 SLC35B3Q9H1N7 401 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 SAP30LQ9HAJ7 183 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 YTHDF2Q9Y5A9 579 aaKnown RBP10.08□□□□□ -0.8
USP53-201ENST00000274030 KIAA1551Q9HCM1 1747 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 A0A1W2PQF6 199 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 TUBAL3A6NHL2 446 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 OGG1O15527 345 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 ERVS71-1P61550 626 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 SNRPEP62304 92 aaKnown RBP10.08□□□□□ -0.8
USP53-201ENST00000274030 ZPLD1Q8TCW7 415 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 CRISPLD2Q9H0B8 497 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 PARD6AQ9NPB6 346 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 MOSPD3O75425 235 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 S100A8P05109 93 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 CSN3P07498 182 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 HOXC8P31273 242 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 FAM162BQ5T6X4 162 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 LSMEM1Q8N8F7 131 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 RBM38Q9H0Z9 239 aaKnown RBP10.08□□□□□ -0.8
USP53-201ENST00000274030 NEU3Q9UQ49 428 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 A0A1W2PPE3 182 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 TRDCB7Z8K6 153 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 CLDN34H7C241 214 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 NEURL1O76050 574 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 FAM78BQ5VT40 261 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 ETFRF1Q6IPR1 90 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 PRSS42Q7Z5A4 293 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 ZNF385AQ96PM9 386 aaKnown RBP10.08□□□□□ -0.8
USP53-201ENST00000274030 COA4Q9NYJ1 87 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 TRAV38-1A0A0B4J264 116 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 ZP3P21754 424 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 HTR1DP28221 377 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 G6PCP35575 357 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 PMELP40967 661 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 RND1Q92730 232 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 NEIL1Q96FI4 390 aaPredicted RBP10.08□□□□□ -0.8
USP53-201ENST00000274030 OR2H1Q9GZK4 316 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 STARD10Q9Y365 291 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 LIPGQ9Y5X9 500 aa10.08□□□□□ -0.8
USP53-201ENST00000274030 A0A1W2PQD3 144 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 FOXS1O43638 330 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 CELA2AP08217 269 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 INHBBP09529 407 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 UBE2L3P68036 154 aaKnown RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 IL13RA2Q14627 380 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 SLC25A30Q5SVS4 291 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 ZNF788Q6ZQV5 615 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 NHLRC2Q8NBF2 726 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 SMRP1Q8NCR6 262 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 PRSS3P2Q8NHM4 247 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 ASB5Q8WWX0 329 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 VAMP8Q9BV40 100 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 SRD5A3Q9H8P0 318 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 GPR35Q9HC97 309 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 OR4C45A6NMZ5 311 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 ARG1P05089 322 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 DAOP14920 347 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 RNF212Q495C1 297 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 TMEM211Q6ICI0 200 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 SLC25A40Q8TBP6 338 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 ZNF488Q96MN9 340 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 HDHD3Q9BSH5 251 aaPredicted RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 RSRP1Q9BUV0 290 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 FKBP11Q9NYL4 201 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 GATCO43716 136 aaKnown RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 SYNGR2O43760 224 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 SP1P08047 785 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 C21orf58P58505 322 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 LSM6P62312 80 aaKnown RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 NHLH1Q02575 133 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 NHLH2Q02577 135 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 C1orf53Q5VUE5 145 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 TRAT1Q6PIZ9 186 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 TIPARPQ7Z3E1 657 aaKnown RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 OR4S2Q8NH73 311 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 MIXL1Q9H2W2 232 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 IGHV3-21A0A0B4J1V1 117 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 TCRBV16S1A1N1A0A5B0 115 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 CDX4O14627 284 aaPredicted RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 GABRA1P14867 456 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 USF1P22415 310 aaPredicted RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 EFNB2P52799 333 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 TMEM65Q6PI78 240 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 UQCC3Q6UW78 93 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 OR1K1Q8NGR3 316 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 MRPL24Q96A35 216 aaKnown RBP10.07□□□□□ -0.8
USP53-201ENST00000274030 NTMQ9P121 344 aa10.07□□□□□ -0.8
USP53-201ENST00000274030 SNRPCP09234 159 aaKnown RBP10.06□□□□□ -0.8
USP53-201ENST00000274030 OR5AL1P0C617 328 aa10.06□□□□□ -0.8
USP53-201ENST00000274030 G0S2P27469 103 aa10.06□□□□□ -0.8
USP53-201ENST00000274030 CEACAM3P40198 252 aa10.06□□□□□ -0.8
USP53-201ENST00000274030 OR52L2PQ8NGH6 319 aa10.06□□□□□ -0.8
USP53-201ENST00000274030 MRGPRFQ96AM1 343 aa10.06□□□□□ -0.8
USP53-201ENST00000274030 PCOLCE2Q9UKZ9 415 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms