RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZMAT3Q9HA38 289 aaKnown RBP11.84□□□□□ -0.51
LDLR-201ENST00000252444 ZNF705EA8MWA4 302 aaPredicted RBP11.84□□□□□ -0.51
LDLR-201ENST00000252444 TM4SF5O14894 197 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 NTN1O95631 604 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 CRYBA1P05813 215 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.84□□□□□ -0.51
LDLR-201ENST00000252444 S100PBPQ96BU1 408 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 PGLYRP3Q96LB9 341 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 HES4Q9HCC6 221 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 SLC39A9Q9NUM3 307 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 CLN8Q9UBY8 286 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 ACKR3P25106 362 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 SUMF2Q8NBJ7 301 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 FBLN5Q9UBX5 448 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 VSIG8P0DPA2 414 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 CCL1P22362 96 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 SF3B6Q9Y3B4 125 aaKnown RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 OR2W1Q9Y3N9 320 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 ANKRD34BA5PLL1 514 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 RFPL4AA6NLU0 287 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 ZNF729A6NN14 1252 aaPredicted RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 RFPL4AL1F8VTS6 287 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 ANXA7P20073 488 aaKnown RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 PRDX2P32119 198 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 GAS1P54826 345 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 ENDOGQ14249 297 aaKnown RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 TMUB2Q71RG4 321 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 COMMD7Q86VX2 200 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 CISD1Q9NZ45 108 aaKnown RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 TINAGQ9UJW2 476 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 RAB19A4D1S5 217 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 IQCF6A8MYZ5 107 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 PROB1E7EW31 1015 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 CLDN14O95500 239 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 DHRS7BQ6IAN0 325 aaPredicted RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 RTN4RL2Q86UN3 420 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 CCDC28AQ8IWP9 274 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 ACTR3CQ9C0K3 210 aaPredicted RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 PSENENQ9NZ42 101 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 KLHDC2Q9Y2U9 406 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 CDS2O95674 445 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 FAM27D1Q5T7N8 215 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 CHRDL1Q9BU40 450 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 NMES1Q9C002 83 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 ASF1BQ9NVP2 202 aa11.83□□□□□ -0.52
LDLR-201ENST00000252444 SLC25A10Q9UBX3 287 aaPredicted RBP11.83□□□□□ -0.52
LDLR-201ENST00000252444 TCF20Q9UGU0 1960 aaKnown RBP11.82□□□□□ -0.52
LDLR-201ENST00000252444 KRBOX1C9JBD0 128 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 LANCL1O43813 399 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 FOXH1O75593 365 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 SNAPINO95295 136 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 OR4A8P0C604 315 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 COX5AP20674 150 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 ADAT3Q96EY9 351 aaPredicted RBP11.82□□□□□ -0.52
LDLR-201ENST00000252444 MARVELD1Q9BSK0 173 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 PLSCR4Q9NRQ2 329 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 SCN8AQ9UQD0 1980 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 SPDEFO95238 335 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 PSMB3P49720 205 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 MRPS11P82912 194 aaKnown RBP11.82□□□□□ -0.52
LDLR-201ENST00000252444 TMEM267Q0VDI3 215 aaPredicted RBP11.82□□□□□ -0.52
LDLR-201ENST00000252444 FOXB2Q5VYV0 432 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 FAAP24Q9BTP7 215 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 SEBOXQ9HB31 216 aaPredicted RBP11.82□□□□□ -0.52
LDLR-201ENST00000252444 LPAR2Q9HBW0 351 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 ZNF355PQ9NSJ1 428 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 A0A1W2PR80 420 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 KCNIP4Q6PIL6 250 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 MOB3BQ86TA1 216 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 OPN4Q9UHM6 478 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 AK3Q9UIJ7 227 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 JPT1Q9UK76 154 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 SMLR1H3BR10 107 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 K7ENP7 123 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 THY1P04216 161 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 CSN1S1P47710 185 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 LINC00303Q3SY05 128 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 OR5P3Q8WZ94 311 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 IL22RA2Q969J5 263 aa11.82□□□□□ -0.52
LDLR-201ENST00000252444 A0A0A6YYJ9 748 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 ATP1A1-AS1Q5TC04 95 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 OCEL1Q9H607 264 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 CDIPTO14735 213 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 MBPP02686 304 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 PATE4P0C8F1 98 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 LRRTM1Q86UE6 522 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 C14orf79Q96F83 325 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 ZNF714Q96N38 554 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 ATG2BQ96BY7 2078 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 MBD3L4A6NDZ8 208 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 MBD3L3A6NE82 208 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 OR5H14A6NHG9 310 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 MBD3L5A6NJ08 208 aaPredicted RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 ERVH48-1M5A8F1 160 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 RFPL3SP0C7P2 107 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 RPL12P30050 165 aaKnown RBP11.81□□□□□ -0.52
LDLR-201ENST00000252444 FAM3AP98173 230 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 OR10K2Q6IF99 312 aa11.81□□□□□ -0.52
LDLR-201ENST00000252444 MBD3L2Q8NHZ7 208 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms