RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PGA3P0DJD8 388 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 RPEL1Q2QD12 228 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 CCSMST1Q4G0I0 132 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 DTX2Q86UW9 622 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 PLPPR2Q96GM1 343 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 TRAPPC4Q9Y296 219 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 KCNE1BA0A087WTH5 132 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 RELQ04864 619 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-217ENST00000637988 ATP5G2Q06055 141 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 FBXW9Q5XUX1 488 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 PCSK4Q6UW60 755 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 Q6ZPB1 254 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF534Q76KX8 674 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 OR10R2Q8NGX6 335 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 FAM210BQ96KR6 192 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 PRNDQ9UKY0 176 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 LOC105371242A0A075B767 164 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 BMPR1BO00238 502 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 PJVKQ0ZLH3 352 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 FAM53AQ6NSI3 398 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-217ENST00000637988 DHRS11Q6UWP2 260 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 PAQR9Q6ZVX9 377 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 HARBI1Q96MB7 349 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 FBXL2Q9UKC9 423 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 K7N7A8 449 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 HLA-GP17693 338 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 NHLH1Q02575 133 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 NHLH2Q02577 135 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 GABRA6Q16445 453 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 HAGHQ16775 308 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF528Q3MIS6 628 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 STAC2Q6ZMT1 411 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 SNRNP40Q96DI7 357 aaKnown RBP5.44□□□□□ -1.54
SCN1A-217ENST00000637988 GPA33Q99795 319 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 MAGT1Q9H0U3 335 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 ADGRL4Q9HBW9 690 aa5.44□□□□□ -1.54
SCN1A-217ENST00000637988 TMPRSS11DO60235 418 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 IGLV3-27P01718 113 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 LGALSLQ3ZCW2 172 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 KHDC3LQ587J8 217 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 HSD17B13Q7Z5P4 300 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 LRRTM1Q86UE6 522 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 D2HGDHQ8N465 521 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 PXT1Q8NFP0 134 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 OR4P4Q8NGL7 312 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 LILRB4Q8NHJ6 448 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF519Q8TB69 540 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 MYOZ3Q8TDC0 251 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SMIM19Q96E16 107 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 FAM103A1Q9BTL3 118 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 UQCC1Q9NVA1 299 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 LILRA1O75019 489 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 HLXQ14774 488 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SPANXN1Q5VSR9 72 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ANGPTL6Q8NI99 470 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 B9D1Q9UPM9 204 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 STAG3L2P0CL84 134 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 BCL3P20749 454 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 G6PCP35575 357 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 AVPI1Q5T686 147 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 RPUSD3Q6P087 351 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 LCN15Q6UWW0 184 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 KLHDC1Q8N7A1 406 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF738Q8NE65 137 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 STXBP6Q8NFX7 210 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SLC26A10Q8NG04 563 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ASB13Q8WXK3 278 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 OR5M11Q96RB7 305 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SMIM7Q9BQ49 75 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 NKX6-2Q9C056 277 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 HILPDAQ9Y5L2 63 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 A0A0A6YYD5 115 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 IGSF23A1L1A6 192 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF701M0R085 212 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 KCNAB3O43448 404 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 CST2P09228 141 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 GALNSP34059 522 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 RIGQ13278 110 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 RPUSD4Q96CM3 377 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 C10orf35Q96D05 121 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SPACA5Q96QH8 159 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 SMIM14Q96QK8 99 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 RAB40CQ96S21 281 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 HSD3B7Q9H2F3 369 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 C12orf10Q9HB07 376 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 COL18A1P39060 1754 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 DEDDO75618 318 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 PTBP1P26599 531 aaKnown RBP eCLIP5.43□□□□□ -1.543e-7■■■■□ 20.5
SCN1A-217ENST00000637988 CIRBPQ14011 172 aaKnown RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 DEFB121Q5J5C9 76 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 NECAP1Q8NC96 275 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 OR6X1Q8NH79 312 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM101Q96IK0 257 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 PEMTQ9UBM1 199 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF230Q9UIE0 474 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-217ENST00000637988 M0R3E3 92 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 EDIL3O43854 480 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 OR2F2O95006 317 aa5.43□□□□□ -1.54
SCN1A-217ENST00000637988 CCL4P13236 92 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms