RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 UTP20O75691 2785 aaKnown RBP16.93■□□□□ 0.3
CLN3-250ENST00000636839 IGHV3OR15-7A0A075B7D8 119 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 DEGS1O15121 323 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 OR2H2O95918 312 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 ACAA1P09110 424 aaPredicted RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 ZNF44P15621 663 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 RAB25P57735 213 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 STEAP1BQ6NZ63 245 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 Q8IYB0 196 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 MUC15Q8N387 334 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 MINDY2Q8NBR6 621 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 UPRTQ96BW1 309 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 OCSTAMPQ9BR26 566 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 ZNF701Q9NV72 531 aaPredicted RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 RCC2Q9P258 522 aaKnown RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 ARFGEF3Q5TH69 2177 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 DOPEY1Q5JWR5 2465 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 ZNF736B4DX44 427 aaPredicted RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 TPD52L2O43399 206 aaKnown RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 CYB5R3P00387 301 aaPredicted RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 AP3S2P59780 193 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 SWI5Q1ZZU3 235 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 MPV17LQ2QL34 196 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 TMEM229BQ8NBD8 167 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 CMSS1Q9BQ75 279 aaKnown RBP16.92■□□□□ 0.3
CLN3-250ENST00000636839 CACNG6Q9BXT2 260 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 FN3KRPQ9HA64 309 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 METRNQ9UJH8 293 aa16.92■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A10PA6NDY2 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A18PA6NE21 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A16PA6NEW6 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A20PA6NIJ5 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A8PA6NJQ4 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A7PA6NKC0 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 CENPXA8MT69 81 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A22PA8MWA6 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A12PA8MX19 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A5PA8MXJ8 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A23PA8MXZ1 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 PMP2P02689 132 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A15PP0C7V4 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A13PP0C7W8 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A14PP0C7W9 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 FAM90A24PP0C7X0 464 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 RCVRNP35243 200 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 GATA4P43694 442 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 IL13RA2Q14627 380 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 ZNF146Q15072 292 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 EFNB3Q15768 340 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 DUSP18Q8NEJ0 188 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 DYNLRB1Q9NP97 96 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 TAS2R8Q9NYW2 309 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 UBR5O95071 2799 aaPredicted RBP16.91■□□□□ 0.3
CLN3-250ENST00000636839 RFPL4AA6NLU0 287 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 RFPL4AL1F8VTS6 287 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 AKAIN1P0CW23 69 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 TNFSF4P23510 183 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 HRH1P35367 487 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 TAS2R19P59542 299 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 SSBP1Q04837 148 aaKnown RBP16.91■□□□□ 0.3
CLN3-250ENST00000636839 CARTPTQ16568 116 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 OR51S1Q8NGJ8 323 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 DPCDQ9BVM2 203 aaPredicted RBP16.91■□□□□ 0.3
CLN3-250ENST00000636839 ANAPC10Q9UM13 185 aa16.91■□□□□ 0.3
CLN3-250ENST00000636839 TRAV6A0A075B6T7 132 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 SRRM5B3KS81 715 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 B9A039 149 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 SLC33A1O00400 549 aaPredicted RBP16.9■□□□□ 0.3
CLN3-250ENST00000636839 RAB3DO95716 219 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 HAND1O96004 215 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 LHBP01229 141 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 MICBQ29980 383 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 NEK7Q8TDX7 302 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 SLC6A7Q99884 636 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 RHOFQ9HBH0 211 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 FLVCR2Q9UPI3 526 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 PPP1R3CQ9UQK1 317 aa16.9■□□□□ 0.3
CLN3-250ENST00000636839 PSPNO60542 156 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 CD74P04233 296 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 ADH4P08319 380 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 ZNF735P0CB33 412 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 C20orf204Q6ZNR8 217 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 HOGA1Q86XE5 327 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 BEST4Q8NFU0 473 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 FAM222BQ8WU58 562 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 CHST6Q9GZX3 395 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 MCRIP1C9JLW8 97 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 TCRBP04435 133 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 CD55P08174 381 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 FCGR3AP08637 254 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 NAT1P18440 290 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 CD80P33681 288 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 CFHR2P36980 270 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 ARL6IP1Q15041 203 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 PLET1Q6UQ28 207 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 MEX3BQ6ZN04 569 aaKnown RBP16.89■□□□□ 0.29
CLN3-250ENST00000636839 LINC00596Q86U02 117 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 CD177Q8N6Q3 437 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 OR4K15Q8NH41 348 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 POM121Q96HA1 1249 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms