RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ING4Q9UNL4 249 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 K7N7A8 449 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 HTR3BO95264 441 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 FAM157CP0CG43 387 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 SRMP19623 302 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 OR3A1P47881 315 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 CLDN12P56749 244 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 PLA2G7Q13093 441 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 METTL11BQ5VVY1 283 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 BAIAP2L2Q6UXY1 529 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 FAM46BQ96A09 425 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 NDUFB11Q9NX14 153 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 AK6Q9Y3D8 172 aaKnown RBP11.09□□□□□ -0.63
LINC00540-202ENST00000616974 GEMIN2O14893 280 aaKnown RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 GABRR1P24046 479 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 CALRP27797 417 aaKnown RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 NPY4RP50391 375 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 OR10A3P58181 314 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 TMEM200BQ69YZ2 307 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 GLIPR1L1Q6UWM5 242 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ASCL4Q6XD76 172 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 FAM185AQ8N0U4 392 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 MS4A15Q8N5U1 240 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ZNF48Q96MX3 618 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 DUX5Q96PT3 197 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 DNTTIP1Q9H147 329 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 OR51E2Q9H255 320 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 FOXJ3Q9UPW0 622 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 TRAV39A0A0B4J263 110 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 TRAV24A0A0B4J272 114 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 SLC33A1O00400 549 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 MAGEB3O15480 346 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ENSAO43768 121 aaKnown RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ALDOBP05062 364 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 GABRA5P31644 462 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 CAV3P56539 151 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 EDDM3BP56851 147 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 GPR50Q13585 617 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ATXN7L3Q14CW9 347 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 HSD17B12Q53GQ0 312 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 BTNL3Q6UXE8 466 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ZNF561Q8N587 486 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 C17orf50Q8WW18 174 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 MED30Q96HR3 178 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 SLC6A7Q99884 636 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 ISYNA1Q9NPH2 558 aa11.08□□□□□ -0.64
LINC00540-202ENST00000616974 MRPS28Q9Y2Q9 187 aaKnown RBP11.08□□□□□ -0.64
LINC00540-202ENST00000616974 A0A0B4J203 849 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 A0A0G2JK05 382 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 CYB5AP00167 134 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 ZNF44P15621 663 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 EPHA1P21709 976 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 AESQ08117 197 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 RSU1Q15404 277 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 KCTD21Q4G0X4 260 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 C22orf42Q6IC83 251 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 VMO1Q7Z5L0 202 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 C5orf24Q7Z6I8 188 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 PXT1Q8NFP0 134 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 DYRK2Q92630 601 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 LHX4Q969G2 390 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 COQ2Q96H96 371 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 WDFY2Q96P53 400 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 CKLFQ9UBR5 152 aa11.07□□□□□ -0.64
LINC00540-202ENST00000616974 CENPVL3A0A0U1RRI6 287 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 A0A1W2PQ09 198 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 RNASEK-C17orf49H0YIS7 233 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 MMP23AO75900 390 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 TOX4O94842 621 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 GLIPR1P48060 266 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 RPL31P62899 125 aaKnown RBP11.06□□□□□ -0.64
LINC00540-202ENST00000616974 GRK1Q15835 563 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 TAF9Q16594 264 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 AWAT2Q6E213 333 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 ZNF782Q6ZMW2 699 aaPredicted RBP11.06□□□□□ -0.64
LINC00540-202ENST00000616974 C8orf46Q8TAG6 207 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 PLPPR1Q8TBJ4 325 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 TNFRSF14Q92956 283 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 UPRTQ96BW1 309 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 MRI1Q9BV20 369 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 YTHDF1Q9BYJ9 559 aaKnown RBP11.06□□□□□ -0.64
LINC00540-202ENST00000616974 ESM1Q9NQ30 184 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 ST3GAL6Q9Y274 331 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 SMIM18P0DKX4 95 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 UNC119Q13432 240 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 ELP2Q6IA86 826 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 HCP5Q6MZN7 132 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 FAM53AQ6NSI3 398 aaPredicted RBP11.06□□□□□ -0.64
LINC00540-202ENST00000616974 CD200R1LQ6Q8B3 271 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 SAXO1Q8IYX7 474 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 OR8H2Q8N162 312 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 PIP4P2Q8N4L2 257 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 ZSCAN4Q8NAM6 433 aaPredicted RBP11.06□□□□□ -0.64
LINC00540-202ENST00000616974 NICN1Q9BSH3 213 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 OCEL1Q9H607 264 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 TCF7L1Q9HCS4 588 aa11.06□□□□□ -0.64
LINC00540-202ENST00000616974 EXOSC4Q9NPD3 245 aaKnown RBP11.06□□□□□ -0.64
LINC00540-202ENST00000616974 FAM172BPA6NC97 362 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 J3QLI3 93 aa11.05□□□□□ -0.64
LINC00540-202ENST00000616974 CCRL2O00421 344 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms