RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 AURKBQ96GD4 344 aaPredicted RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 PLEKHA8Q96JA3 519 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 OPALINQ96PE5 141 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 ALKBH3Q96Q83 286 aaPredicted RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 NIPSNAP3BQ9BS92 247 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 NMRAL1Q9HBL8 299 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 TMEM106BQ9NUM4 274 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 IFNKQ9P0W0 207 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 UVRAGQ9P2Y5 699 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 CLN8Q9UBY8 286 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.34□□□□□ -1.873e-16■■■■■ 32.4
LINC00540-201ENST00000611481 RNF24Q9Y225 148 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 GMPPBQ9Y5P6 360 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 FLVCR1Q9Y5Y0 555 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 SELENOKQ9Y6D0 94 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 LRP1BQ9NZR2 4599 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 PKD1P98161 4303 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 A0A1W2PRD5 423 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 A0A1W2PRF3 423 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 A0A1W2PRM7 423 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 RAB19A4D1S5 217 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 TM9SF1O15321 606 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SYNGR1O43759 233 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 ENSAO43768 121 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 CHST1O43916 411 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 KHDRBS3O75525 346 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 KLHL2O95198 593 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 IGHV1-46P01743 117 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 UBCP0CG48 685 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 PRB4P10163 310 aaPredicted RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 MYL2P10916 166 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 CSNK2A2P19784 350 aaPredicted RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 AZU1P20160 251 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 CNTFRP26992 372 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 MDH2P40926 338 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 NAA10P41227 235 aaPredicted RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 ARHGDIAP52565 204 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 BLVRAP53004 296 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 RAB25P57735 213 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 ABCE1P61221 599 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 MRPS15P82914 257 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 RIPPLY1Q0D2K3 151 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SLC17A1Q14916 467 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 TOMM34Q15785 309 aaPredicted RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 STUMQ69YW2 141 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR52W1Q6IF63 320 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SASS6Q6UVJ0 657 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 HACD2Q6Y1H2 254 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 TMPPEQ6ZT21 453 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 AAED1Q7RTV5 226 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 RNF130Q86XS8 419 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SLC35F2Q8IXU6 374 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 KIRREL3Q8IZU9 778 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 C11orf42Q8N5U0 333 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 FAM86B1Q8N7N1 296 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 C8orf31Q8N9H6 132 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR4F6Q8NGB9 312 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR8B3Q8NGG8 313 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR4D10Q8NGI6 311 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR4A15Q8NGL6 344 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR4A4PQ8NGN8 299 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SYNPRQ8TBG9 265 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 GPR151Q8TDV0 419 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF317Q96PQ6 595 aaPredicted RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR8B2Q96RD0 313 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 CNN2Q99439 309 aaKnown RBP3.33□□□□□ -1.88
LINC00540-201ENST00000611481 EFCAB11Q9BUY7 163 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 PRRG3Q9BZD7 231 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 MFFQ9GZY8 342 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 CSTL1Q9H114 145 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 OR51B6Q9H340 312 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 NIPAL2Q9H841 368 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SIGLEC8Q9NYZ4 499 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 SORL1Q92673 2214 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 RNF213Q63HN8 5207 aa3.33□□□□□ -1.88
LINC00540-201ENST00000611481 TANC2Q9HCD6 1990 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 IGLV3-9A0A075B6K5 115 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 TRPC5OSA6NMA1 111 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 SIGLEC5O15389 551 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 OXSR1O95747 527 aaPredicted RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 CA1P00915 261 aaPredicted RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 IGKV1D-16P01601 117 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 HCKP08631 526 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF43P17038 809 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 RPL35AP18077 110 aaKnown RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 GCAP28676 217 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 IFNA8P32881 189 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 S100A5P33763 92 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ELK3P41970 407 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 SLC1A1P43005 524 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 CRATP43155 626 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 MRPL19P49406 292 aaKnown RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 PSMD4P55036 377 aaKnown RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ERVS71-1P61550 626 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 IL5RAQ01344 420 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 PRB3Q04118 309 aaPredicted RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 EIF2B1Q14232 305 aaKnown RBP3.32□□□□□ -1.88
LINC00540-201ENST00000611481 CD226Q15762 336 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF74Q16587 644 aa3.32□□□□□ -1.88
LINC00540-201ENST00000611481 ARHGAP11BQ3KRB8 267 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms