RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 DLX6P56179 175 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 SRSF2Q01130 221 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 ZNF273Q14593 569 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 ARMCX4Q5H9R4 360 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 NHLRC3Q5JS37 347 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 TMEM200BQ69YZ2 307 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 HCP5Q6MZN7 132 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 ZNF773Q6PK81 442 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 CD200R1LQ6Q8B3 271 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 CDH26Q8IXH8 852 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 OR4D6Q8NGJ1 314 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 THRSPQ92748 146 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 PCGF1Q9BSM1 259 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 UNKLQ9H9P5 680 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 CKLFQ9UBR5 152 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 A0A0G2JK05 382 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 A0A1W2PP11 408 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 KCTD21Q4G0X4 260 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 C1orf122Q6ZSJ8 110 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 CEACAM19Q7Z692 300 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 OR4M1Q8NGD0 313 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 C22orf15Q8WYQ4 148 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 PHYHIPQ92561 330 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 CPNE2Q96FN4 548 aaPredicted RBP16■□□□□ 0.15
SHKBP1-221ENST00000599833 GPER1Q99527 375 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 SLC6A7Q99884 636 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 CHST6Q9GZX3 395 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 NDUFB11Q9NX14 153 aa16■□□□□ 0.15
SHKBP1-221ENST00000599833 M0R1W7 72 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 SLC33A1O00400 549 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 GABRA5P31644 462 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 RPL31P62899 125 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 PRB3Q04118 309 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 PDCD1Q15116 288 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 PIGYQ3MUY2 71 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 METTL11BQ5VVY1 283 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 RUSC1-AS1Q66K80 236 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 METAP1DQ6UB28 335 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 VMO1Q7Z5L0 202 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 ASCC1Q8N9N2 400 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 MUL1Q969V5 352 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 FAM192AQ9GZU8 254 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 EXOSC4Q9NPD3 245 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 ESM1Q9NQ30 184 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 ONECUT1Q9UBC0 465 aa15.99■□□□□ 0.15
SHKBP1-221ENST00000599833 KIAA2026Q5HYC2 2103 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 TRAV24A0A0B4J272 114 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 SHISA3A0PJX4 238 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 RNASEK-C17orf49H0YIS7 233 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 SIRPB1O00241 398 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 RGS9O75916 674 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 VENTXO95231 258 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 IFNA2P01563 188 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 CCL3L1P16619 93 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 SRMP19623 302 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 CAPZA1P52907 286 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 ERVFRD-1P60508 538 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 IL13RA2Q14627 380 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 TRAM1Q15629 374 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 BRD3OSQ6XYD6 125 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 NKAIN3Q8N8D7 197 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 CYYR1Q96J86 154 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 IFT22Q9H7X7 185 aa15.98■□□□□ 0.15
SHKBP1-221ENST00000599833 SH2D1BO14796 132 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 PSMA1P25786 263 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 BMXP51813 675 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 HSD17B12Q53GQ0 312 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 C1orf100Q5SVJ3 147 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 FIP1L1Q6UN15 594 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 USP43Q70EL4 1123 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 FAM185AQ8N0U4 392 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 PIP4P2Q8N4L2 257 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 SVOPQ8N4V2 548 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 TPRX1Q8N7U7 411 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 TBC1D15Q8TC07 691 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 COQ2Q96H96 371 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 MDFIQ99750 246 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 UQCC2Q9BRT2 126 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 METTL9Q9H1A3 318 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 PRDM13Q9H4Q3 707 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 SIRT7Q9NRC8 400 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 ING4Q9UNL4 249 aa15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 MRPS28Q9Y2Q9 187 aaKnown RBP15.97■□□□□ 0.15
SHKBP1-221ENST00000599833 A0A1W2PQ09 198 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 C17orf98A8MV24 154 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 MGST3O14880 152 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 HTR3BO95264 441 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 CSN2P05814 226 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 GABRR1P24046 479 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 PRTN3P24158 256 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 ERP29P30040 261 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 RBM11P57052 281 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 HILS1P60008 231 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 KLRD1Q13241 179 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 RSU1Q15404 277 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 GRK1Q15835 563 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 GLIPR1L1Q6UWM5 242 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 JAGN1Q8N5M9 183 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 CHST4Q8NCG5 386 aa15.96■□□□□ 0.15
SHKBP1-221ENST00000599833 TMEM104Q8NE00 496 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms