RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-219	ENST00000599575	C1orf147	Q96MC9	270 aa	Predicted RBP	13.74	□□□□□ -0.21
SHKBP1-219	ENST00000599575	LPAR3	Q9UBY5	353 aa		13.74	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SCOC	Q9UIL1	159 aa		13.74	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ST3GAL6	Q9Y274	331 aa		13.74	□□□□□ -0.21
SHKBP1-219	ENST00000599575	TLN2	Q9Y4G6	2542 aa		13.74	□□□□□ -0.21
SHKBP1-219	ENST00000599575	CR1	P17927	2039 aa		13.74	□□□□□ -0.21
SHKBP1-219	ENST00000599575	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.74	□□□□□ -0.21	3e-7	■■□□□ 13.4
SHKBP1-219	ENST00000599575	HIVEP2	P31629	2446 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	IGHV2-70D	A0A0C4DH43	119 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	LOC100506127	A0A0U1RQW1	187 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575		A0A1W2PPH5	198 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	IFITM5	A6NNB3	132 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	NOTO	A8MTQ0	251 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	AIP	O00170	330 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	MGST3	O14880	152 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	DEGS1	O15121	323 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	CSN2	P05814	226 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ARSB	P15848	533 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	HNF1A	P20823	631 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SERPINA2	P20848	420 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ERP29	P30040	261 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	RPL5	P46777	297 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	RBM11	P57052	281 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	COL10A1	Q03692	680 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	IKZF1	Q13422	519 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	BTN2A1	Q7KYR7	527 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ASCC1	Q8N9N2	400 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	LY6G5B	Q8NDX9	201 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SMR3A	Q99954	134 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	DCTN5	Q9BTE1	182 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	MRI1	Q9BV20	369 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	FUNDC2	Q9BWH2	189 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	LPAR2	Q9HBW0	351 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	YAE1D1	Q9NRH1	226 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	STEAP1	Q9UHE8	339 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	RPUSD1	Q9UJJ7	312 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	INSIG2	Q9Y5U4	225 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ABCA1	O95477	2261 aa		13.73	□□□□□ -0.21
SHKBP1-219	ENST00000599575	NSD1	Q96L73	2696 aa	Predicted RBP	13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	OR2H2	O95918	312 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	GLA	P06280	429 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ZNF44	P15621	663 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	MGMT	P16455	207 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	NDUFB7	P17568	137 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SCAND1	P57086	179 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	PAX5	Q02548	391 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575		Q6P435	159 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	C1orf122	Q6ZSJ8	110 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	GPR141	Q7Z602	305 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	ANKRD13B	Q86YJ7	626 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	BATF2	Q8N1L9	274 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	KIR3DL3	Q8N743	410 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SLC25A28	Q96A46	364 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	GFI1	Q99684	422 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	NUDT16L1	Q9BRJ7	211 aa	Known RBP	13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	CENPO	Q9BU64	300 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575	NCOR1P1	Q9H4R4	102 aa		13.72	□□□□□ -0.21
SHKBP1-219	ENST00000599575		A0A0G2JK05	382 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SHISA3	A0PJX4	238 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	CRTAP	O75718	401 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	GABRR1	P24046	479 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	MEF2C	Q06413	473 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	PAX8	Q06710	450 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	C17orf107	Q6ZR85	190 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	GDPD3	Q7L5L3	318 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	CMTM4	Q8IZR5	234 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	OR10K1	Q8NGX5	313 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	PTX4	Q96A99	478 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	FAM3D	Q96BQ1	224 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	BCL7B	Q9BQE9	202 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	URM1	Q9BTM9	101 aa	Known RBP	13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	SHARPIN	Q9H0F6	387 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	IL36RN	Q9UBH0	155 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	CDC42EP3	Q9UKI2	254 aa		13.71	□□□□□ -0.21
SHKBP1-219	ENST00000599575	MALRD1	Q5VYJ5	2156 aa		13.71	□□□□□ -0.22
SHKBP1-219	ENST00000599575	MED13L	Q71F56	2210 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575		A0A1B0GW55	424 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	TMEM14DP	A8MWL7	114 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	C22orf46	C9J442	243 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	SLC33A1	O00400	549 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	FCN3	O75636	299 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	OR7C1	O76099	320 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	IL1A	P01583	271 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L2	P0CJ85	424 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L3	P0CJ86	424 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L4	P0CJ87	422 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L5	P0CJ88	424 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L6	P0CJ89	424 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L7	P0CJ90	424 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	VSIG8	P0DPA2	414 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUSP1	P28562	367 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	SDC2	P34741	201 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	CEBPD	P49716	269 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	QRFP	P83859	136 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	RBM39	Q14498	530 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	GRK1	Q15835	563 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	PIGY	Q3MUY2	71 aa		13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	FAHD2B	Q6P2I3	314 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	DUX4L9	Q6RFH8	374 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-219	ENST00000599575	FAHD2A	Q96GK7	314 aa		13.7	□□□□□ -0.22

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