RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 FAM90A18PA6NE21 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A16PA6NEW6 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A20PA6NIJ5 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A8PA6NJQ4 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A7PA6NKC0 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A22PA8MWA6 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A12PA8MX19 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A5PA8MXJ8 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A23PA8MXZ1 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 IGLV1-44P01699 117 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A15PP0C7V4 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A13PP0C7W8 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A14PP0C7W9 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM90A24PP0C7X0 464 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 PPP3CBP16298 524 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 CALCRP30988 508 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 TAS2R31P59538 309 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 KRTCAP3Q53RY4 240 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 TMEM128Q5BJH2 165 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 BEND4Q6ZU67 534 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 C17orf78Q8N4C9 275 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 CISD2Q8N5K1 135 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 FAM57AQ8TBR7 257 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 ZNF2Q9BSG1 426 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 TMPRSS13Q9BYE2 586 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 C12orf4Q9NQ89 552 aa14.53□□□□□ -0.08
SHKBP1-216ENST00000598201 ZFYVE26Q68DK2 2539 aa14.52□□□□□ -0.08
SHKBP1-216ENST00000598201 OR5H1A6NKK0 313 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 DUS4LO95620 317 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 CRHP06850 196 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 OR5H8P0DN80 308 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 PRKACAP17612 351 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 CXCL2P19875 107 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 SUPT4H1P63272 117 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 IL24Q13007 206 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 PHB2Q99623 299 aa14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 RCC2Q9P258 522 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-216ENST00000598201 IGHV1-18A0A0C4DH31 117 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 IQCF6A8MYZ5 107 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 TIMP3P35625 211 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 PMELP40967 661 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SLC22A25Q6T423 547 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 KCTD9Q7L273 389 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 RTL8AQ9BWD3 113 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 PKIBQ9C010 78 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 PRR13Q9NZ81 148 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SLC25A15Q9Y619 301 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SMG1Q96Q15 3661 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 IGHV3-64DA0A0J9YX35 117 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 H0YL77 283 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 J3QT63 122 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 HSPB6O14558 160 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 NOS1APO75052 506 aaPredicted RBP14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 RGS11O94810 467 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SORDQ00796 357 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 IKZF1Q13422 519 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 FAM76BQ5HYJ3 339 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 TMEM211Q6ICI0 200 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 CLEC18BQ6UXF7 455 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SNRNP40Q96DI7 357 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 ELMOD3Q96FG2 381 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SEC22AQ96IW7 307 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 SCGB3A2Q96PL1 93 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 MICU1Q9BPX6 476 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 ADAT1Q9BUB4 502 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 NECAP2Q9NVZ3 263 aa14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 RP1L1Q8IWN7 2480 aaPredicted RBP14.51□□□□□ -0.09
SHKBP1-216ENST00000598201 TRAV14DV4A0A0A6YYC5 116 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 IGHV2OR16-5A0A0B4J2B6 119 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 DBX1A6NMT0 343 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 SFT2D2O95562 160 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 MPC2O95563 127 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 RPS2P15880 293 aaKnown RBP14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 HLA-GP17693 338 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 NFYAP23511 347 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 TDGF1P3P51864 188 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 SLC9A3R2Q15599 337 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 MPV17LQ2QL34 196 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 C5orf24Q7Z6I8 188 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 OBP2BQ9NPH6 170 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 FZR1Q9UM11 496 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 KALRNO60229 2985 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 MCRIP1C9JLW8 97 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 PGAM2P15259 253 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 CEACAM8P31997 349 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 SRSF4Q08170 494 aaKnown RBP14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 SURF2Q15527 256 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 DHRS11Q6UWP2 260 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 FAM58AQ8N1B3 248 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 SCCPDHQ8NBX0 429 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 OR8H1Q8NGG4 311 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 WDR13Q9H1Z4 485 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 ZNF286AQ9HBT8 521 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 DECR2Q9NUI1 292 aa14.5□□□□□ -0.09
SHKBP1-216ENST00000598201 FXYD6-FXYD2A0A087WZ82 144 aa14.49□□□□□ -0.09
SHKBP1-216ENST00000598201 LRP5LA4QPB2 252 aa14.49□□□□□ -0.09
SHKBP1-216ENST00000598201 PRSS44E7EML9 344 aa14.49□□□□□ -0.09
SHKBP1-216ENST00000598201 GLI4P10075 376 aa14.49□□□□□ -0.09
SHKBP1-216ENST00000598201 SELEP16581 610 aa14.49□□□□□ -0.09
SHKBP1-216ENST00000598201 SEC61A1P61619 476 aaKnown RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms