RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LDLRAD2Q5SZI1 272 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 MINOS1Q5TGZ0 78 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 TMEM244Q5VVB8 128 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 Q6ZS46 218 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 UTS2BQ765I0 119 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 C10orf67Q8IYJ2 551 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 PP6455Q8WZ26 134 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 CEP19Q96LK0 163 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 OR5M11Q96RB7 305 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 OCSTAMPQ9BR26 566 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 ALG8Q9BVK2 526 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 MRPS18AQ9NVS2 196 aaKnown RBP10.05□□□□□ -0.8
TRIM28-212ENST00000597995 MINOS1-NBL1R4GNA1 71 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 IGKV1-12A0A0C4DH73 117 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 TMEM82A0PJX8 343 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 MEX3AA1L020 520 aaKnown RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 FAM90A22PA8MWA6 464 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 F2RL2O00254 374 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 WBP4O75554 376 aaKnown RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 MPIG6BO95866 241 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 IGKV1D-12P01611 117 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 PIPP12273 146 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 MEF2CQ06413 473 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 ALKBH1Q13686 389 aaKnown RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 SMN1Q16637 294 aaKnown RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 DNAAF1Q8NEP3 725 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 OR5AU1Q8NGC0 362 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 OR52N4Q8NGI2 321 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 OR52I1Q8NGK6 324 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 BORCS8Q96FH0 119 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 RBFOX1Q9NWB1 397 aaKnown RBP10.04□□□□□ -0.8
TRIM28-212ENST00000597995 ERVK13-1Q9NX77 482 aa10.04□□□□□ -0.8
TRIM28-212ENST00000597995 DSCAML1Q8TD84 2053 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 KMT2CQ8NEZ4 4911 aaKnown RBP10.03□□□□□ -0.8
TRIM28-212ENST00000597995 K7EIL1 84 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 DUS4LO95620 317 aaKnown RBP10.03□□□□□ -0.8
TRIM28-212ENST00000597995 BAG2O95816 211 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 SERPINA3P01011 423 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 CALCBP10092 127 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 BCL3P20749 454 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 DUSP1P28562 367 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 MTCP1P56278 107 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 EDDM3BP56851 147 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 ACTA2P62736 377 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 ACTG2P63267 376 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 DYNC1I2Q13409 638 aaKnown RBP10.03□□□□□ -0.8
TRIM28-212ENST00000597995 GDPD3Q7L5L3 318 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 TCF23Q7RTU1 214 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 C16orf82Q7Z2V1 217 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 EGFL6Q8IUX8 553 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 SYS1Q8N2H4 156 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 ASCC1Q8N9N2 400 aaKnown RBP10.03□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF714Q96N38 554 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 SPACA5Q96QH8 159 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 SEBOXQ9HB31 216 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-212ENST00000597995 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-212ENST00000597995 HHLA2Q9UM44 414 aa10.03□□□□□ -0.8
TRIM28-212ENST00000597995 hADV38S2A0JD32 116 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 SNTNA6NMZ2 147 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 MPZL2O60487 215 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 PSPNO60542 156 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 ZFPL1O95159 310 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 CLIC3O95833 236 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 LIMS3P0CW19 117 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 LIMS4P0CW20 117 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 PF4V1P10720 104 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 POU3F4P49335 361 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 RBP2P50120 134 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 ATP1B3P54709 279 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 SLC35A2P78381 396 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 SLC34A1Q06495 639 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 RAB40BQ12829 278 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 PDZK1IP1Q13113 114 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 IL18R1Q13478 541 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 CENPVQ7Z7K6 275 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-212ENST00000597995 OR8H2Q8N162 312 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 OR13C3Q8NGS6 347 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 EMG1Q92979 244 aaKnown RBP10.02□□□□□ -0.81
TRIM28-212ENST00000597995 RFT1Q96AA3 541 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 RCC1LQ96I51 464 aaKnown RBP10.02□□□□□ -0.81
TRIM28-212ENST00000597995 AKR1E2Q96JD6 320 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 SNX22Q96L94 193 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 Q96MT0 163 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 PDCD1LG2Q9BQ51 273 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 SMPD3Q9NY59 655 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-212ENST00000597995 HILPDAQ9Y5L2 63 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 TSSC4Q9Y5U2 329 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-212ENST00000597995 SESN1Q9Y6P5 492 aa10.02□□□□□ -0.81
TRIM28-212ENST00000597995 COL7A1Q02388 2944 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 IGHV2-26A0A0B4J1V2 119 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 TRBV2A0A0J9YWF9 115 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 A0A1W2PRX2 142 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 TCRBV4S1A1TA0A5B7 111 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 FADS2O95864 444 aaKnown RBP10.01□□□□□ -0.81
TRIM28-212ENST00000597995 HAND1O96004 215 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 PF4P02776 101 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 MT-ND2P03891 347 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF20P17024 532 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 PRKACBP22694 351 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 GTF2A1P52655 376 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms