RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 H0YIZ8 118 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SMAD9O15198 467 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 SYT7O43581 403 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 B3GALT2O43825 422 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 GMFGO60234 142 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 EIF4EBP3O60516 100 aaPredicted RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 CTSVO60911 334 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 WDR1O75083 606 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 NDUFS7O75251 213 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ADAP1O75689 374 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 TSPAN15O95858 294 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 IGHMP01871 453 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 F13BP05160 661 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ISG15P05161 165 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 GSTP1P09211 210 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 SEC11BP0C7V7 166 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF888P0CJ79 500 aaPredicted RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 NPIPA8P0DM63 369 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SMIM10L1P0DMW3 83 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 NQO2P16083 231 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ALOX5APP20292 161 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 LMO1P25800 156 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 PEBP1P30086 187 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 SNCAP37840 140 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ACAA2P42765 397 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 EMDP50402 254 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF84P51523 738 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 RPS23P62266 143 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 KIAA0141Q14154 515 aaPredicted RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 RBM39Q14498 530 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 HNF4GQ14541 408 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 CLINT1Q14677 625 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SLC17A1Q14916 467 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNHIT3Q15649 155 aaPredicted RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 TOMM34Q15785 309 aaPredicted RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 SSX2Q16385 188 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SGCAQ16586 387 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF74Q16587 644 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 PRICKLE4Q2TBC4 344 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 C2orf76Q3KRA6 126 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF260Q3ZCT1 412 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 TMEM128Q5BJH2 165 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ALG10Q5BKT4 473 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 MESTQ5EB52 335 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 PYY3Q5JQD4 70 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 C9orf152Q5JTZ5 239 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 KRBOX4Q5JUW0 171 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ASPHD2Q6ICH7 369 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SLC18B1Q6NT16 456 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 VN1R4Q7Z5H5 301 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 CATSPERDQ86XM0 798 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 LYPD6Q86Y78 171 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SULF2Q8IWU5 870 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF679Q8IYX0 411 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 LRRC18Q8N456 261 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 C19orf47Q8N9M1 422 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF610Q8N9Z0 462 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 UBAC2Q8NBM4 344 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 OR9K2Q8NGE7 335 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 OR52E1Q8NGJ3 308 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 OR51A4Q8NGJ6 313 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 OR10AC1Q8NH08 325 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 OTOSQ8NHW6 89 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNF563Q8TA94 476 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 STT3BQ8TCJ2 826 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ZNRF4Q8WWF5 429 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 IGFBPL1Q8WX77 278 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SLAMF9Q96A28 289 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ANKRD9Q96BM1 317 aaPredicted RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 C3orf49Q96BT1 292 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 S100PBPQ96BU1 408 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 RRNAD1Q96FB5 475 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 SMIM10Q96HG1 83 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 C14orf144Q96I85 54 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SEC22AQ96IW7 307 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 AKR1E2Q96JD6 320 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 C2orf50Q96LR7 162 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ADAD1Q96M93 576 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 PTCHD1Q96NR3 888 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 RNF126Q9BV68 326 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 RBM24Q9BX46 236 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 ANGPTL4Q9BY76 406 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 ARV1Q9H2C2 271 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 KCNK15Q9H427 330 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 PRDM13Q9H4Q3 707 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SH2D2AQ9NP31 389 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 FAM60AQ9NP50 221 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 SIRT7Q9NRC8 400 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 UBQLN4Q9NRR5 601 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 TAS2R4Q9NYW5 299 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 OR5AC2Q9NZP5 309 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 FBXL17Q9UF56 701 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 RAB22AQ9UL26 194 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 DAPP1Q9UN19 280 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 GTF2A1LQ9UNN4 478 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 MRPS33Q9Y291 106 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 TMED7Q9Y3B3 224 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 RHBDD3Q9Y3P4 386 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 LIPGQ9Y5X9 500 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 YLPM1P49750 1951 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms