RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZNF286AQ9HBT8 521 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 C14orf166Q9Y224 244 aaKnown RBP2.06□□□□□ -2.08
SS18-214ENST00000580003 MYO9BQ13459 2157 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 GATCO43716 136 aaKnown RBP2.05□□□□□ -2.08
SS18-214ENST00000580003 PDYNP01213 254 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 SOD3P08294 240 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 DAOAP59103 153 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 BNIP2Q12982 314 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 NOXRED1Q6NXP6 359 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 OR6K3Q8NGY3 331 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 OR2V1Q8NHB1 315 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 ANAPC13Q9BS18 74 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 PLEKHA1Q9HB21 404 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 ANXA10Q9UJ72 324 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 NOS1P29475 1434 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 MIA3Q5JRA6 1907 aa2.05□□□□□ -2.08
SS18-214ENST00000580003 A0A1B0GTQ1 180 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 SEC14L6B5MCN3 397 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 STAG3L3P0CL85 134 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 RALBP11234 206 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 IL12BP29460 328 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 HIKESHIQ53FT3 197 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 CYP4Z1Q86W10 505 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 DNAAF3Q8N9W5 541 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 CYB5R1Q9UHQ9 305 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
SS18-214ENST00000580003 TRBV24-1A0A075B6N3 115 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 POP7O75817 140 aaKnown RBP2.03□□□□□ -2.08
SS18-214ENST00000580003 PSG4Q00888 419 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 GBE1Q04446 702 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 Q499Y3 187 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 GALNT10Q86SR1 603 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 FBXO36Q8NEA4 188 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 TWIST2Q8WVJ9 160 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 CENPNQ96H22 339 aaPredicted RBP2.03□□□□□ -2.08
SS18-214ENST00000580003 IFNKQ9P0W0 207 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 SLC22A14Q9Y267 594 aa2.03□□□□□ -2.08
SS18-214ENST00000580003 ANKRD20A5PA0PJZ0 165 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 TP53I11O14683 189 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 ALOX12BO75342 701 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 GPR75O95800 540 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 TUBG1P23258 451 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 PRTN3P24158 256 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 CNTFRP26992 372 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 P2RY2P41231 377 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 BCAP31P51572 246 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 CASP8Q14790 479 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 TMEM25Q86YD3 366 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 CA13Q8N1Q1 262 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 OR2M3Q8NG83 312 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 ULBP1Q9BZM6 244 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 TUBG2Q9NRH3 451 aa2.02□□□□□ -2.09
SS18-214ENST00000580003 KMT2EQ8IZD2 1858 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 ZNF593O00488 134 aaPredicted RBP2.01□□□□□ -2.09
SS18-214ENST00000580003 ETHE1O95571 254 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 ELK4P28324 431 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 CCT6AP40227 531 aaKnown RBP2.01□□□□□ -2.09
SS18-214ENST00000580003 GPR4P46093 362 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 GLYATQ6IB77 296 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 TCF23Q7RTU1 214 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 OR52K2Q8NGK3 314 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 MFSD8Q8NHS3 518 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 RNASE11Q8TAA1 199 aaKnown RBP2.01□□□□□ -2.09
SS18-214ENST00000580003 ZNF436Q9C0F3 470 aaPredicted RBP2.01□□□□□ -2.09
SS18-214ENST00000580003 OR2D2Q9H210 308 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 RGCCQ9H4X1 137 aa2.01□□□□□ -2.09
SS18-214ENST00000580003 PEF1Q9UBV8 284 aaKnown RBP2.01□□□□□ -2.09
SS18-214ENST00000580003 TRAV8-7A0A075B6U6 113 aa2□□□□□ -2.09
SS18-214ENST00000580003 LOC100653049A0A140TA62 436 aa2□□□□□ -2.09
SS18-214ENST00000580003 SH2D1AO60880 128 aa2□□□□□ -2.09
SS18-214ENST00000580003 KRT34O76011 436 aa2□□□□□ -2.09
SS18-214ENST00000580003 S1PR2O95136 353 aa2□□□□□ -2.09
SS18-214ENST00000580003 CECR9P0C854 216 aa2□□□□□ -2.09
SS18-214ENST00000580003 ARR3P36575 388 aa2□□□□□ -2.09
SS18-214ENST00000580003 SPIN4Q56A73 249 aa2□□□□□ -2.09
SS18-214ENST00000580003 ERICH5Q6P6B1 374 aa2□□□□□ -2.09
SS18-214ENST00000580003 MAL2Q969L2 176 aa2□□□□□ -2.09
SS18-214ENST00000580003 TXNDC17Q9BRA2 123 aa2□□□□□ -2.09
SS18-214ENST00000580003 MFSD1Q9H3U5 465 aa2□□□□□ -2.09
SS18-214ENST00000580003 RBM12B-AS1Q9P1G2 102 aa2□□□□□ -2.09
SS18-214ENST00000580003 KPTNQ9Y664 436 aa2□□□□□ -2.09
SS18-214ENST00000580003 ICE1Q9Y2F5 2266 aa2□□□□□ -2.09
SS18-214ENST00000580003 NEURL4Q96JN8 1562 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 F5H5T6 163 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 LY6LH3BQJ8 138 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 KLRC4-KLRK1H3BQV0 150 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 GUSBP08236 651 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 GABRA1P14867 456 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 ZNF140P52738 457 aaPredicted RBP1.99□□□□□ -2.09
SS18-214ENST00000580003 TMEM176BQ3YBM2 270 aaPredicted RBP1.99□□□□□ -2.09
SS18-214ENST00000580003 PEX13Q92968 403 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 CHRNA10Q9GZZ6 450 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 HSPE1-MOB4S4R3N1 261 aa1.99□□□□□ -2.09
SS18-214ENST00000580003 AQRO60306 1485 aaKnown RBP eCLIP1.99□□□□□ -2.09
SS18-214ENST00000580003 FCGBPQ9Y6R7 5405 aaPredicted RBP1.98□□□□□ -2.09
SS18-214ENST00000580003 NRCAMQ92823 1304 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 OR5H14A6NHG9 310 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 NCF1BA6NI72 391 aaPredicted RBP1.98□□□□□ -2.09
SS18-214ENST00000580003 NCF1CA8MVU1 366 aaPredicted RBP1.98□□□□□ -2.09
SS18-214ENST00000580003 LIPCP11150 499 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms