RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 HAND1O96004 215 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 MELTFP08582 738 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 ZNF44P15621 663 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 FUT3P21217 361 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 IL13RA2Q14627 380 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 DNM1P46Q6ZS02 220 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 LYSMD2Q8IV50 215 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 GVQW1Q8N7I0 195 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 SUMF2Q8NBJ7 301 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 OR11L1Q8NGX0 322 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 NUDT16L1Q9BRJ7 211 aaKnown RBP21.05■□□□□ 0.96
SHMT1-207ENST00000580002 CCDC32Q9BV29 185 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 RHOFQ9HBH0 211 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 AK3Q9UIJ7 227 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 A0A1B0GW55 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 ORC5O43913 435 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 GOSR1O95249 250 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L2P0CJ85 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L3P0CJ86 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L4P0CJ87 422 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L5P0CJ88 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L6P0CJ89 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L7P0CJ90 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 HACD4Q5VWC8 232 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4L9Q6RFH8 374 aaPredicted RBP21.04■□□□□ 0.96
SHMT1-207ENST00000580002 GPX8Q8TED1 209 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 RCC2Q9P258 522 aaKnown RBP21.04■□□□□ 0.96
SHMT1-207ENST00000580002 NLKQ9UBE8 527 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DNAJB11Q9UBS4 358 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 DUX4Q9UBX2 424 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 WIPI2Q9Y4P8 454 aa21.04■□□□□ 0.96
SHMT1-207ENST00000580002 GABARAPH6UMI1 98 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 GSTZ1O43708 216 aaPredicted RBP21.03■□□□□ 0.96
SHMT1-207ENST00000580002 SCGNO76038 276 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A1Q86YD7 464 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 ZFAND2BQ8WV99 257 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 IGFBPL1Q8WX77 278 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 RAB1BQ9H0U4 201 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 ING3Q9NXR8 418 aa21.03■□□□□ 0.96
SHMT1-207ENST00000580002 ZNF230Q9UIE0 474 aaPredicted RBP21.03■□□□□ 0.96
SHMT1-207ENST00000580002 OR2AT4A6NND4 320 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 SLC33A1O00400 549 aaPredicted RBP21.02■□□□□ 0.96
SHMT1-207ENST00000580002 PSPNO60542 156 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 KNG1P01042 644 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 KRTAP10-9P60411 292 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM189A2Q15884 450 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 MPV17LQ2QL34 196 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 SMIM21Q3B7S5 101 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 Q6ZPA2 131 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FCAMRQ8WWV6 532 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 MAFIPQ8WZ33 124 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 HSF4Q9ULV5 492 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FASNP49327 2511 aaKnown RBP21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A10PA6NDY2 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A18PA6NE21 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A16PA6NEW6 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A20PA6NIJ5 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A8PA6NJQ4 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A7PA6NKC0 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A22PA8MWA6 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A12PA8MX19 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A5PA8MXJ8 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A23PA8MXZ1 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A15PP0C7V4 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A13PP0C7W8 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A14PP0C7W9 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 FAM90A24PP0C7X0 464 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 IRF2P14316 349 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 C5orf24Q7Z6I8 188 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 TRAPPC6BQ86SZ2 158 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 CHST6Q9GZX3 395 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 RASL12Q9NYN1 266 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 NPTNQ9Y639 398 aa21.02■□□□□ 0.96
SHMT1-207ENST00000580002 SH2D1BO14796 132 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 GYPAP02724 150 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 GSTP1P09211 210 aaKnown RBP21.01■□□□□ 0.95
SHMT1-207ENST00000580002 SELLP14151 372 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 PRDX2P32119 198 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 GDNFP39905 211 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 GABRA2P47869 451 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 COL10A1Q03692 680 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 ARFRP1Q13795 201 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 DPCDQ9BVM2 203 aaPredicted RBP21.01■□□□□ 0.95
SHMT1-207ENST00000580002 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP21.01■□□□□ 0.95
SHMT1-207ENST00000580002 TBC1D24Q9ULP9 559 aa21.01■□□□□ 0.95
SHMT1-207ENST00000580002 TMEM82A0PJX8 343 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 OVOL3O00110 214 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 PLA2G10O15496 165 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 ZNF181Q2M3W8 571 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 SPIN3Q5JUX0 258 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 ANGPTL6Q8NI99 470 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 PPA2Q9H2U2 334 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 ZNF222Q9UK12 451 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 RBMX2Q9Y388 322 aaKnown RBP21■□□□□ 0.95
SHMT1-207ENST00000580002 LRRC30A6NM36 301 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 H7C417 338 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 RP2O75695 350 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 TPPPO94811 219 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 GNG2P59768 71 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 TRIQKQ629K1 86 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms