RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 KCNK7Q9Y2U2 307 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 PPIAL4AQ9Y536 164 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 IGKV1D-17A0A075B6S4 117 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 TRAV38-1A0A0B4J264 116 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 TRAV24A0A0B4J272 114 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 RFPL4AA6NLU0 287 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 SERPINE3A8MV23 424 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 RFPL4AL1F8VTS6 287 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 SH2D1BO14796 132 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 TNFRSF13BO14836 293 aaPredicted RBP13.51□□□□□ -0.25
SS18-211ENST00000578954 NDUFS7O75251 213 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 OR2H2O95918 312 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 DUSP1P28562 367 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 PPP5CP53041 499 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 KRTAP10-9P60411 292 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 PITPNAQ00169 270 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 PNLIPRP3Q17RR3 467 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 MICBQ29980 383 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 ATPAF1Q5TC12 328 aaPredicted RBP13.51□□□□□ -0.25
SS18-211ENST00000578954 SHEQ5VZ18 495 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 PIP4P2Q8N4L2 257 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 CD177Q8N6Q3 437 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 GDPD1Q8N9F7 314 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 DTX3Q8N9I9 347 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 BOLLQ8N9W6 283 aaKnown RBP13.51□□□□□ -0.25
SS18-211ENST00000578954 SDSLQ96GA7 329 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 NEDD4LQ96PU5 975 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 DNTTIP1Q9H147 329 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 CHODLQ9H9P2 273 aa13.51□□□□□ -0.25
SS18-211ENST00000578954 FBN2P35556 2912 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 LRBAP50851 2863 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 IGHV3OR15-7A0A075B7D8 119 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 LYNX1G3V0Z9 82 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 SLC33A1O00400 549 aaPredicted RBP13.5□□□□□ -0.25
SS18-211ENST00000578954 DEGS1O15121 323 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 GSTZ1O43708 216 aaPredicted RBP13.5□□□□□ -0.25
SS18-211ENST00000578954 LY6HO94772 140 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 IGHV2-70P01814 119 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 IGHV4-39P01824 125 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 LYNX1P0DP58 116 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 AMY2BP19961 511 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 PRDX2P32119 198 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 TMEM33P57088 247 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 CDNFQ49AH0 187 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 HIST2H2BCQ6DN03 193 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 ZNF788Q6ZQV5 615 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 C6orf201Q7Z4U5 140 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 RTN4RL2Q86UN3 420 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 SULT4A1Q9BR01 284 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 GSX2Q9BZM3 304 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 BARX1Q9HBU1 254 aaPredicted RBP13.5□□□□□ -0.25
SS18-211ENST00000578954 PLEKHJ1Q9NW61 149 aa13.5□□□□□ -0.25
SS18-211ENST00000578954 MRPS7Q9Y2R9 242 aaKnown RBP13.5□□□□□ -0.25
SS18-211ENST00000578954 SULT1C2O00338 296 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 ZNF737O75373 536 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 ZNF44P15621 663 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 GNB3P16520 340 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 BTG1P62324 171 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 PAX5Q02548 391 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 MADCAM1Q13477 382 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 PDCD1Q15116 288 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 ZMYND11Q15326 602 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 NKAPLQ5M9Q1 402 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 HACD4Q5VWC8 232 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 SFRP4Q6FHJ7 346 aaPredicted RBP13.49□□□□□ -0.25
SS18-211ENST00000578954 SNX29P2Q8IUI4 249 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 SUMF2Q8NBJ7 301 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 C19orf18Q8NEA5 215 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 SMIM4Q8WVI0 70 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 NRGNQ92686 78 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 CYYR1Q96J86 154 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 CCDC32Q9BV29 185 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 DPCDQ9BVM2 203 aaPredicted RBP13.49□□□□□ -0.25
SS18-211ENST00000578954 SCPEP1Q9HB40 452 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 TMEM165Q9HC07 324 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 OR14J1Q9UGF5 321 aa13.49□□□□□ -0.25
SS18-211ENST00000578954 TMEM82A0PJX8 343 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 TMEM235A6NFC5 223 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 GABARAPH6UMI1 98 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 NDUFA2O43678 99 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 CSN2P05814 226 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 PTHLHP12272 177 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 MDH2P40926 338 aaKnown RBP13.48□□□□□ -0.25
SS18-211ENST00000578954 KCNJ3P48549 501 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 CEBPDP49716 269 aaPredicted RBP13.48□□□□□ -0.25
SS18-211ENST00000578954 COL10A1Q03692 680 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 KCNJ8Q15842 424 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 ATAD3CQ5T2N8 411 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 OLFML2AQ68BL7 652 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 GAPTQ8N292 157 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 OR5T2Q8NGG2 359 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 GPX8Q8TED1 209 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 GAFA1Q96PS6 74 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 ZNF665Q9H7R5 613 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 ZMAT3Q9HA38 289 aaKnown RBP13.48□□□□□ -0.25
SS18-211ENST00000578954 KAAG1Q9UBP8 84 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 METRNQ9UJH8 293 aa13.48□□□□□ -0.25
SS18-211ENST00000578954 ELF5Q9UKW6 265 aaPredicted RBP13.48□□□□□ -0.25
SS18-211ENST00000578954 RBMX2Q9Y388 322 aaKnown RBP13.48□□□□□ -0.25
SS18-211ENST00000578954 MAB21L2Q9Y586 359 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms