RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DEXIO95424 95 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 CCDC166P0CW27 439 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 PGA4P0DJD7 388 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 PGA3P0DJD8 388 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 CTSEP14091 401 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 RPL14P50914 215 aaKnown RBP4.36□□□□□ -1.71
VPS53-219ENST00000576019 PRKCDQ05655 676 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 CD47Q08722 323 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 FADDQ13158 208 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 ASAH1Q13510 395 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 FLOT2Q14254 428 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 COQ5Q5HYK3 327 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 RBM48Q5RL73 367 aaKnown RBP4.36□□□□□ -1.71
VPS53-219ENST00000576019 SAPCD1Q5SSQ6 148 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 CCNJQ5T5M9 372 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 IDNKQ5T6J7 187 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 LCN12Q6JVE5 192 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 EPGNQ6UW88 154 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 SSX7Q7RTT5 188 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 FAM19A1Q7Z5A9 133 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 DOLPP1Q86YN1 238 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 CA13Q8N1Q1 262 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 CADM2Q8N3J6 435 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 ATPAF2Q8N5M1 289 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 TMEM252Q8N6L7 170 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 OR51G1Q8NGK1 321 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 SFXN5Q8TD22 340 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 RXFP2Q8WXD0 754 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 RORBQ92753 470 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 IL22RA2Q969J5 263 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 RCN3Q96D15 328 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 SGTBQ96EQ0 304 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 ZNF488Q96MN9 340 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 TSNAXQ99598 290 aaKnown RBP4.36□□□□□ -1.71
VPS53-219ENST00000576019 KIR2DL4Q99706 377 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 LITAFQ99732 161 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 ZNF426Q9BUY5 554 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 OSBPL11Q9BXB4 747 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 ACOT13Q9NPJ3 140 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 SHPKQ9UHJ6 478 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 SNX24Q9Y343 169 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 STYXL1Q9Y6J8 313 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 IGHV7-81A0A0B4J1V7 117 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 TMEM210A6NLX4 147 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 SHISA9B4DS77 424 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 C3orf84H3BNL1 204 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 EDIL3O43854 480 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 RDH16O75452 317 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 PGAM2P15259 253 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 PSMB5P28074 263 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 LOXP28300 417 aaPredicted RBP4.35□□□□□ -1.71
VPS53-219ENST00000576019 EVI2BP34910 448 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 GALR1P47211 349 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 DLX1P56177 255 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 AP1S2P56377 157 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 ZNF121P58317 390 aaPredicted RBP4.35□□□□□ -1.71
VPS53-219ENST00000576019 NANOS3P60323 173 aaKnown RBP4.35□□□□□ -1.71
VPS53-219ENST00000576019 RAB31Q13636 194 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 RGS21Q2M5E4 152 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 CCDC14Q49A88 953 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 TIMM23BQ5SRD1 257 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 FAM27D1Q5T7N8 215 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 ZNF658Q5TYW1 1059 aaPredicted RBP4.35□□□□□ -1.71
VPS53-219ENST00000576019 OR2T5Q6IEZ7 315 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 FRMPD2BQ6IN97 320 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 Q6ZT83 130 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 ZNF589Q86UQ0 364 aaPredicted RBP4.35□□□□□ -1.71
VPS53-219ENST00000576019 LRRC34Q8IZ02 419 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 CBR4Q8N4T8 237 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 ARIH2OSQ8N7S6 290 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 OR2L5Q8NG80 312 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 OR2T29Q8NH02 315 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 FLYWCH2Q96CP2 140 aaKnown RBP4.35□□□□□ -1.71
VPS53-219ENST00000576019 WDR34Q96EX3 536 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 LXNQ9BS40 222 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 FGFBP2Q9BYJ0 223 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 SLC17A9Q9BYT1 436 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 HEXA-AS1Q9H8Q6 139 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 CLCF1Q9UBD9 225 aa4.35□□□□□ -1.71
VPS53-219ENST00000576019 A0A0B4J2E0 115 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 A6NDN8 102 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 VGLL3A8MV65 326 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 ZNF780AO75290 641 aaPredicted RBP4.34□□□□□ -1.71
VPS53-219ENST00000576019 NTN1O95631 604 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 STATHP02808 62 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 GKN3PP0CG01 181 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 CXCL8P10145 99 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 AK4P27144 223 aaPredicted RBP4.34□□□□□ -1.71
VPS53-219ENST00000576019 HRH1P35367 487 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 COILP38432 576 aaPredicted RBP4.34□□□□□ -1.71
VPS53-219ENST00000576019 MAGEA2P43356 314 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 RGS6P49758 472 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 TAF6P49848 677 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 AQP5P55064 265 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 TAS2R39P59534 338 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 CXCL6P80162 114 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 RPL36AP83881 106 aaKnown RBP4.34□□□□□ -1.71
VPS53-219ENST00000576019 REG3AQ06141 175 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 AQP6Q13520 282 aa4.34□□□□□ -1.71
VPS53-219ENST00000576019 C2CD6Q53TS8 623 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms