RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RCC2Q9P258 522 aaKnown RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 SLC23A1Q9UHI7 598 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 OSGIN2Q9Y236 505 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 KCNK7Q9Y2U2 307 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 CACNA1CQ13936 2221 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 TEX15Q9BXT5 2789 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 PHF3Q92576 2039 aaKnown RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 A0A0A6YYD4 124 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 TRBV6-6A0A0A6YYG2 114 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 IGKV1-12A0A0C4DH73 117 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 A0A1W2PP11 408 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 GEMIN2O14893 280 aaKnown RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 DEGS1O15121 323 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 CREBL2O60519 120 aaPredicted RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 NXPH2O95156 264 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 DIRAS3O95661 229 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 PLATP00750 562 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 KNG1P01042 644 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 IGKV1D-12P01611 117 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 ADH4P08319 380 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 PGA5P0DJD9 388 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 TNFRSF1AP19438 455 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 BCL3P20749 454 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 CALCRP30988 508 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 ARPC4P59998 168 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 SEC61A1P61619 476 aaKnown RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 RRAS2P62070 204 aaPredicted RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 SMIM21Q3B7S5 101 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 ATAD3CQ5T2N8 411 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 SLC22A25Q6T423 547 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 IDO2Q6ZQW0 420 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 MOB1BQ7L9L4 216 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 SCCPDHQ8NBX0 429 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 OR10AD1Q8NGE0 317 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 OR51S1Q8NGJ8 323 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 OR10K1Q8NGX5 313 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 OR6F1Q8NGZ6 308 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 LILRB1Q8NHL6 650 aaPredicted RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 EMG1Q92979 244 aaKnown RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 FBXW5Q969U6 566 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 SLAMF9Q96A28 289 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 MRPL24Q96A35 216 aaKnown RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 CCDC120Q96HB5 630 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 NRIP2Q9BQI9 281 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 GINS4Q9BRT9 223 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 ST6GALNAC5Q9BVH7 336 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 EGLN1Q9GZT9 426 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 PPA2Q9H2U2 334 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 MS4A5Q9H3V2 200 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 KCNK15Q9H427 330 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 ZMAT3Q9HA38 289 aaKnown RBP6.78□□□□□ -1.32
VPS39-213ENST00000570062 RAB9BQ9NP90 201 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 MTCH1Q9NZJ7 389 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 IL19Q9UHD0 177 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 DUSP13Q9UII6 198 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 SH3BGRL2Q9UJC5 107 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 ZNF221Q9UK13 617 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 KALRNO60229 2985 aa6.78□□□□□ -1.32
VPS39-213ENST00000570062 DNAJC13O75165 2243 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 APC2O95996 2303 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 TRAV6A0A075B6T7 132 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 LRRC30A6NM36 301 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 CEACAM18A8MTB9 384 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 SSX5O60225 188 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 GOSR1O95249 250 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 GRPP07492 148 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 CD3EP07766 207 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 IRF2P14316 349 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 PRKACAP17612 351 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 HRH1P35367 487 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 MPV17P39210 176 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 GLP1RP43220 463 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 CCR6P51684 374 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ERVK11-1P61568 191 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ZNF154Q13106 437 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 MAB21L1Q13394 359 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 IKZF1Q13422 519 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 TESK1Q15569 626 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 NKPD1Q17RQ9 610 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 PRR30Q53SZ7 412 aaPredicted RBP6.77□□□□□ -1.33
VPS39-213ENST00000570062 BEX5Q5H9J7 111 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 TRAT1Q6PIZ9 186 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 DHRS11Q6UWP2 260 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 GLDNQ6ZMI3 551 aaPredicted RBP6.77□□□□□ -1.33
VPS39-213ENST00000570062 OVCH2Q7RTZ1 564 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 C6orf201Q7Z4U5 140 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 MYPOPQ86VE0 399 aaPredicted RBP6.77□□□□□ -1.33
VPS39-213ENST00000570062 OR11L1Q8NGX0 322 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ZFAND1Q8TCF1 268 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 TMEM171Q8WVE6 324 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 NUDCD2Q8WVJ2 157 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 GCDHQ92947 438 aaPredicted RBP6.77□□□□□ -1.33
VPS39-213ENST00000570062 DACT3Q96B18 629 aaPredicted RBP6.77□□□□□ -1.33
VPS39-213ENST00000570062 FAAP24Q9BTP7 215 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 OR51J1Q9H342 316 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 GHITMQ9H3K2 345 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 HES4Q9HCC6 221 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 CHMP1AQ9HD42 196 aaPredicted RBP6.77□□□□□ -1.33
VPS39-213ENST00000570062 CA10Q9NS85 328 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ANXA10Q9UJ72 324 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms