RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ZNF696Q9H7X3 374 aa16.5■□□□□ 0.23
CLK3-225ENST00000569063 EXOSC4Q9NPD3 245 aaKnown RBP16.5■□□□□ 0.23
CLK3-225ENST00000569063 GSTK1Q9Y2Q3 226 aa16.5■□□□□ 0.23
CLK3-225ENST00000569063 LINC00312Q9Y6C7 94 aa16.5■□□□□ 0.23
CLK3-225ENST00000569063 OR2H2O95918 312 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 IGHV1-8P0DP01 117 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 TMEM225BP0DP42 221 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 RAB3AP20336 220 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 COX7A1P24310 79 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 ERP29P30040 261 aaKnown RBP16.49■□□□□ 0.23
CLK3-225ENST00000569063 TGFBR2P37173 567 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 OR3A1P47881 315 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 BMXP51813 675 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 SNU13P55769 128 aaKnown RBP16.49■□□□□ 0.23
CLK3-225ENST00000569063 LGALS4P56470 323 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 ASPHD2Q6ICH7 369 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 ZNF782Q6ZMW2 699 aaPredicted RBP16.49■□□□□ 0.23
CLK3-225ENST00000569063 OR13D1Q8NGV5 346 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 OR52N1Q8NH53 320 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 LINC01006Q8NI28 216 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 GGHQ92820 318 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 CPNE2Q96FN4 548 aaPredicted RBP16.49■□□□□ 0.23
CLK3-225ENST00000569063 SSX3Q99909 188 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 CLEC2DQ9UHP7 191 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 PCDHGB5Q9Y5G0 923 aa16.49■□□□□ 0.23
CLK3-225ENST00000569063 SIRT4Q9Y6E7 314 aaPredicted RBP16.49■□□□□ 0.23
CLK3-225ENST00000569063 MEX3AA1L020 520 aaKnown RBP16.48■□□□□ 0.23
CLK3-225ENST00000569063 FAM90A8PA6NJQ4 464 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 ANKRD65E5RJM6 399 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 H3BUX3 64 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 CD2P06729 351 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 GNAO1P09471 354 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 SOX2P48431 317 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 MED21Q13503 144 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 DHRS7BQ6IAN0 325 aaPredicted RBP16.48■□□□□ 0.23
CLK3-225ENST00000569063 Q6ZSV7 163 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 C8orf59Q8N0T1 100 aaPredicted RBP16.48■□□□□ 0.23
CLK3-225ENST00000569063 TPRX1Q8N7U7 411 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 CHST4Q8NCG5 386 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 OR11H6Q8NGC7 330 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 SMIM19Q96E16 107 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 C16orf95Q9H693 158 aa16.48■□□□□ 0.23
CLK3-225ENST00000569063 CHCHD3Q9NX63 227 aaKnown RBP16.48■□□□□ 0.23
CLK3-225ENST00000569063 A0A0G2JK05 382 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 ODF3BA8MYP8 253 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 SIRPB1O00241 398 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 MAGEB3O15480 346 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 MTNR1BP49286 362 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 P2RX3P56373 397 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 ST3GAL4Q11206 333 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 LRRC75BQ2VPJ9 315 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 ELP2Q6IA86 826 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 LAIR2Q6ISS4 152 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 Q6P435 159 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 ZNF485Q8NCK3 441 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 PXT1Q8NFP0 134 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 FBLIM1Q8WUP2 373 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 TAS2R4Q9NYW5 299 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 CNOT2Q9NZN8 540 aaKnown RBP16.47■□□□□ 0.23
CLK3-225ENST00000569063 ZNF281Q9Y2X9 895 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 UBE2J1Q9Y385 318 aaPredicted RBP16.47■□□□□ 0.23
CLK3-225ENST00000569063 TBL2Q9Y4P3 447 aaKnown RBP16.47■□□□□ 0.23
CLK3-225ENST00000569063 RNF114Q9Y508 228 aa16.47■□□□□ 0.23
CLK3-225ENST00000569063 DSCAML1Q8TD84 2053 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 EFCAB10A6NFE3 127 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 TSPAN9O75954 239 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 LALBAP00709 142 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 ALDOBP05062 364 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 ARG1P05089 322 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 CSN2P05814 226 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 ZNF626Q68DY1 528 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 DMKNQ6E0U4 476 aaPredicted RBP16.46■□□□□ 0.23
CLK3-225ENST00000569063 OR51A2Q8NGJ7 313 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 TMEM106AQ96A25 262 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 DCLRE1BQ9H816 532 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 PLCXD1Q9NUJ7 323 aa16.46■□□□□ 0.23
CLK3-225ENST00000569063 FUOMA2VDF0 154 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 VGLL3A8MV65 326 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 GABRPO00591 440 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 CLPXO76031 633 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 ZNF44P15621 663 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 LHFPL4Q7Z7J7 247 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 SATL1Q86VE3 508 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 CORO2AQ92828 525 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 GHSRQ92847 366 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 MALSU1Q96EH3 234 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 CITED1Q99966 193 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 VCXQ9H320 206 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 PSORS1C1Q9UIG5 152 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 SESN1Q9Y6P5 492 aa16.45■□□□□ 0.22
CLK3-225ENST00000569063 SLC33A1O00400 549 aaPredicted RBP16.44■□□□□ 0.22
CLK3-225ENST00000569063 DEGS1O15121 323 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 PAX6P26367 422 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 PROK1P58294 105 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 SCN1BQ07699 218 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 SRSF4Q08170 494 aaKnown RBP16.44■□□□□ 0.22
CLK3-225ENST00000569063 ASCL4Q6XD76 172 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 DYNAPQ8N1N2 210 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 Q8NFD4 153 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 PIFOQ8TCI5 191 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms