RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C5orf24Q7Z6I8 188 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 PDZD9Q8IXQ8 264 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 ARPC5LQ9BPX5 153 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 GLRX2Q9NS18 164 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 MPC1Q9Y5U8 109 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 PTPRBP23467 1997 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 MSGN1A6NI15 193 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 F5H0A9 414 aaPredicted RBP17.35■□□□□ 0.37
CLN3-230ENST00000568076 C3orf80F5H4A9 247 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 DUSP1P28562 367 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 DEFB109BQ30KR1 87 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 IGSF11Q5DX21 431 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 OR5L1Q8NGL2 311 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 MOB3AQ96BX8 217 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 ZNF488Q96MN9 340 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 SLC25A32Q9H2D1 315 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 GSKIPQ9P0R6 139 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 PRRC2CQ9Y520 2896 aaKnown RBP17.34■□□□□ 0.37
CLN3-230ENST00000568076 TRAV17A0A0B4J275 112 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 LYZL6O75951 148 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 TBC1D28Q2M2D7 210 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 UNQ6126/PRO20091Q6UXV3 157 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 FAM214BQ7L5A3 538 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 PIK3IP1Q96FE7 263 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 NAA60Q9H7X0 242 aa17.34■□□□□ 0.37
CLN3-230ENST00000568076 NAPSAO96009 420 aa17.33■□□□□ 0.37
CLN3-230ENST00000568076 AADACP22760 399 aa17.33■□□□□ 0.37
CLN3-230ENST00000568076 CA6P23280 308 aa17.33■□□□□ 0.37
CLN3-230ENST00000568076 SP6Q3SY56 376 aa17.33■□□□□ 0.37
CLN3-230ENST00000568076 RTN4IP1Q8WWV3 396 aaPredicted RBP17.33■□□□□ 0.37
CLN3-230ENST00000568076 MRPL24Q96A35 216 aaKnown RBP17.33■□□□□ 0.37
CLN3-230ENST00000568076 FAM86C1Q9NVL1 165 aa17.33■□□□□ 0.37
CLN3-230ENST00000568076 LHX6Q9UPM6 363 aa17.33■□□□□ 0.37
CLN3-230ENST00000568076 GNG3P63215 75 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 TMEM187Q14656 261 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 MPV17LQ2QL34 196 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 PHLDA2Q53GA4 152 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 PHYHIPLQ96FC7 376 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 SLC2A9Q9NRM0 540 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 PFDN2Q9UHV9 154 aa17.33■□□□□ 0.36
CLN3-230ENST00000568076 OR5B21A6NL26 309 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 PRSS44E7EML9 344 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 AQP7O14520 342 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 HSPB6O14558 160 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 SMPD2O60906 423 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 OR5AC1P0C628 307 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 PRKACAP17612 351 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 UCP3P55916 312 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 ERVS71-1P61550 626 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 TSC22D1Q15714 1073 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 IAH1Q2TAA2 248 aaPredicted RBP17.32■□□□□ 0.36
CLN3-230ENST00000568076 ABCA11PQ4W5N1 156 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 GGNBP1Q5YKI7 109 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 FBXW12Q6X9E4 464 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 Q6ZS49 121 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 ZNF573Q86YE8 665 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 OR11L1Q8NGX0 322 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 GALNT14Q96FL9 552 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 Q9N2K0 584 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 CYTL1Q9NRR1 136 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 SHANK1Q9Y566 2161 aa17.32■□□□□ 0.36
CLN3-230ENST00000568076 RHBDL1O75783 438 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 GLP1RP43220 463 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 IDH3GP51553 393 aaPredicted RBP17.31■□□□□ 0.36
CLN3-230ENST00000568076 TGFBR3Q03167 851 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 GABRA6Q16445 453 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 Q6ZT83 130 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 C9orf106Q8NAJ2 232 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 CCDC120Q96HB5 630 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 OR51I2Q9H344 312 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 BARX1Q9HBU1 254 aaPredicted RBP17.31■□□□□ 0.36
CLN3-230ENST00000568076 KIR2DL2P43627 348 aaPredicted RBP17.31■□□□□ 0.36
CLN3-230ENST00000568076 S100A10P60903 97 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 UBE2NP61088 152 aaKnown RBP17.31■□□□□ 0.36
CLN3-230ENST00000568076 IL24Q13007 206 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 SLC38A6Q8IZM9 456 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 C17orf78Q8N4C9 275 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 PRSS33Q8NF86 280 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 STOML3Q8TAV4 291 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 LRRC20Q8TCA0 184 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 LINC00052Q96N35 136 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 RSRP1Q9BUV0 290 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 OR2J1Q9GZK6 312 aa17.31■□□□□ 0.36
CLN3-230ENST00000568076 A8MXK9 166 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 PPYP01298 95 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 FGF2P09038 288 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 SCTP09683 121 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 SNTB1Q13884 538 aaKnown RBP17.3■□□□□ 0.36
CLN3-230ENST00000568076 SRSF7Q16629 238 aaKnown RBP eCLIP17.3■□□□□ 0.36
CLN3-230ENST00000568076 VWA1Q6PCB0 445 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 CNEP1R1Q8N9A8 125 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 AQP10Q96PS8 301 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 NARFLQ9H6Q4 476 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 PLSCR2Q9NRY7 297 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 KCNIP3Q9Y2W7 256 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 CNOT1A5YKK6 2376 aaKnown RBP17.3■□□□□ 0.36
CLN3-230ENST00000568076 ZNF292O60281 2723 aa17.3■□□□□ 0.36
CLN3-230ENST00000568076 J3QW42 95 aa17.29■□□□□ 0.36
CLN3-230ENST00000568076 TPD52L2O43399 206 aaKnown RBP17.29■□□□□ 0.36
CLN3-230ENST00000568076 CEACAM4O75871 244 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms