RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	SRSF4	Q08170	494 aa	Known RBP	5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	ZNF273	Q14593	569 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	ZNF146	Q15072	292 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	AANAT	Q16613	207 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	DHRS7B	Q6IAN0	325 aa	Predicted RBP	5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	SERPINA12	Q8IW75	414 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	SAXO1	Q8IYX7	474 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR8H2	Q8N162	312 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR51A4	Q8NGJ6	313 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR52I1	Q8NGK6	324 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR10AC1	Q8NH08	325 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR5AK2	Q8NH90	309 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	LINC01006	Q8NI28	216 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	HAVCR2	Q8TDQ0	301 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	CYGB	Q8WWM9	190 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	EMG1	Q92979	244 aa	Known RBP	5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	SPSB1	Q96BD6	273 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	CNBD2	Q96M20	576 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	OPALIN	Q96PE5	141 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	SSX3	Q99909	188 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	ZNF649	Q9BS31	505 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	YTHDF1	Q9BYJ9	559 aa	Known RBP	5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	COMMD4	Q9H0A8	199 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	ZCCHC4	Q9H5U6	513 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	C16orf95	Q9H693	158 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	RHOF	Q9HBH0	211 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	FGF20	Q9NP95	211 aa	Predicted RBP	5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	RBFOX1	Q9NWB1	397 aa	Known RBP	5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	VPREB3	Q9UKI3	123 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	NOTCH3	Q9UM47	2321 aa		5.63	□□□□□ -1.51
SF3B3-209	ENST00000567635	PLXNB1	O43157	2135 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	TRBV2	A0A0J9YWF9	115 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	hADV38S2	A0JD32	116 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635		H3BUX3	64 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	MGST3	O14880	152 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	WBP4	O75554	376 aa	Known RBP	5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	TSPAN9	O75954	239 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	CLPX	O76031	633 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	ZFPL1	O95159	310 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	CCDC159	P0C7I6	412 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	LIMS3	P0CW19	117 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	LIMS4	P0CW20	117 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	TMEM225B	P0DP42	221 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	CALCB	P10092	127 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	COX7A1	P24310	79 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	DCK	P27707	260 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PRR20E	P86478	221 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PRR20C	P86479	221 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PRR20D	P86480	221 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PRR20B	P86481	221 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PRR20A	P86496	221 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	SCN1B	Q07699	218 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	IL18R1	Q13478	541 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	GRK1	Q15835	563 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	SMN1	Q16637	294 aa	Known RBP	5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	LRRC75B	Q2VPJ9	315 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	SPIN3	Q5JUX0	258 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	TMPRSS11A	Q6ZMR5	421 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635		Q6ZSV7	163 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PARP16	Q8N5Y8	322 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR4S1	Q8NGB4	309 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR52N4	Q8NGI2	321 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR13C9	Q8NGT0	318 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	OR13D1	Q8NGV5	346 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PPP1R35	Q8TAP8	253 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	APH1B	Q8WW43	257 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	WFDC12	Q8WWY7	111 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	RFT1	Q96AA3	541 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	DGCR14	Q96DF8	476 aa	Known RBP	5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	MALSU1	Q96EH3	234 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	SPACA5	Q96QH8	159 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	CITED1	Q99966	193 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PDCD1LG2	Q9BQ51	273 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	JAM3	Q9BX67	310 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PPA2	Q9H2U2	334 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	HMG20A	Q9NP66	347 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	IL36RN	Q9UBH0	155 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	GSTK1	Q9Y2Q3	226 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	PCDHGB5	Q9Y5G0	923 aa		5.62	□□□□□ -1.51
SF3B3-209	ENST00000567635	ANK2	Q01484	3957 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	IGKV1-12	A0A0C4DH73	117 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635		A0A0G2JK05	382 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	IRGM	A1A4Y4	181 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	MEX3A	A1L020	520 aa	Known RBP	5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	FUOM	A2VDF0	154 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	FAM90A8P	A6NJQ4	464 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	TIMM23	O14925	209 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	DEGS1	O15121	323 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	MAGEB3	O15480	346 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	SULT1B1	O43704	296 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	PSPN	O60542	156 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	KDM4B	O94953	1096 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	TNFAIP8	O95379	198 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	IGKV1D-12	P01611	117 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	ARG1	P05089	322 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	HCK	P08631	526 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	IGHV1-8	P0DP01	117 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	LMO1	P25800	156 aa		5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	ERP29	P30040	261 aa	Known RBP	5.61	□□□□□ -1.51
SF3B3-209	ENST00000567635	NOTCH1	P46531	2555 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms