RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 FGF20Q9NP95 211 aaPredicted RBP16.81■□□□□ 0.28
CLN3-219ENST00000565778 TBL2Q9Y4P3 447 aaKnown RBP16.81■□□□□ 0.28
CLN3-219ENST00000565778 SULT1B1O43704 296 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 ALX3O95076 343 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 OR2H2O95918 312 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 RAB13P51153 203 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 GTF2A1P52655 376 aaPredicted RBP16.8■□□□□ 0.28
CLN3-219ENST00000565778 KISS1Q15726 138 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 FAM189A2Q15884 450 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 PARP16Q8N5Y8 322 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 OR11H6Q8NGC7 330 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 PIFOQ8TCI5 191 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 RHOFQ9HBH0 211 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 FBLN5Q9UBX5 448 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 PKD1L1Q8TDX9 2849 aa16.8■□□□□ 0.28
CLN3-219ENST00000565778 FUOMA2VDF0 154 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 MAGEB3O15480 346 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 WBP4O75554 376 aaKnown RBP16.79■□□□□ 0.28
CLN3-219ENST00000565778 LIMS3P0CW19 117 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 LIMS4P0CW20 117 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 ZNF44P15621 663 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 ERP29P30040 261 aaKnown RBP16.79■□□□□ 0.28
CLN3-219ENST00000565778 OR3A1P47881 315 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 SSX2Q16385 188 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 ZNF626Q68DY1 528 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 ASPHD2Q6ICH7 369 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 TMPRSS11AQ6ZMR5 421 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 TCF23Q7RTU1 214 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 DYNAPQ8N1N2 210 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 CYGBQ8WWM9 190 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 ABCB10Q9NRK6 738 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 SIGLEC9Q9Y336 463 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 SESN1Q9Y6P5 492 aa16.79■□□□□ 0.28
CLN3-219ENST00000565778 MGAM2Q2M2H8 2515 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 A0A0G2JK05 382 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 ODF3BA8MYP8 253 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 DEGS1O15121 323 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 CLIC3O95833 236 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 LMO1P25800 156 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 DCKP27707 260 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 KIR2DS4P43632 304 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 SOX2P48431 317 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 ETV1P50549 477 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 P2RX3P56373 397 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 AESQ08117 197 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 ZNF691Q5VV52 312 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 RPL22L1Q6P5R6 122 aaKnown RBP16.78■□□□□ 0.28
CLN3-219ENST00000565778 SATL1Q86VE3 508 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 OR4C13Q8NGP0 309 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 CNIH3Q8TBE1 160 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 FOXRED1Q96CU9 486 aaPredicted RBP16.78■□□□□ 0.28
CLN3-219ENST00000565778 NKX3-1Q99801 234 aaPredicted RBP16.78■□□□□ 0.28
CLN3-219ENST00000565778 ING3Q9NXR8 418 aa16.78■□□□□ 0.28
CLN3-219ENST00000565778 UBE2J1Q9Y385 318 aaPredicted RBP16.78■□□□□ 0.28
CLN3-219ENST00000565778 TRRAPQ9Y4A5 3859 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 TRGV10A0A0A0MS01 117 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 VGLL3A8MV65 326 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 RAB3AP20336 220 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 IL18R1Q13478 541 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 TTC23Q5W5X9 447 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 CRIP3Q6Q6R5 217 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 LIAT1Q6ZQX7 453 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 DTX3Q8N9I9 347 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 NR1H4Q96RI1 486 aaPredicted RBP16.77■□□□□ 0.28
CLN3-219ENST00000565778 GPER1Q99527 375 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 JAM3Q9BX67 310 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 TMEM133Q9H2Q1 129 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 HILPDAQ9Y5L2 63 aa16.77■□□□□ 0.28
CLN3-219ENST00000565778 IRGMA1A4Y4 181 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 GLIPR1P48060 266 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 ZP1P60852 638 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 CCDC58Q4VC31 144 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 LDLRAD2Q5SZI1 272 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 OR2G6Q5TZ20 316 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 Q6P435 159 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 DHRSXQ8N5I4 330 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 CHST4Q8NCG5 386 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 OR2T6Q8NHC8 308 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 NDNFQ8TB73 568 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 RPS4Y2Q8TD47 263 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 GPR148Q8TDV2 347 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 CPNE2Q96FN4 548 aaPredicted RBP16.76■□□□□ 0.27
CLN3-219ENST00000565778 CLEC7AQ9BXN2 247 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 NPFFR1Q9GZQ6 430 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 GAL3ST2Q9H3Q3 398 aa16.76■□□□□ 0.27
CLN3-219ENST00000565778 CHCHD3Q9NX63 227 aaKnown RBP16.76■□□□□ 0.27
CLN3-219ENST00000565778 IGHV2-26A0A0B4J1V2 119 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 MMP23AO75900 390 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 CD2P06729 351 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 MYL12AP19105 171 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 MTNR1BP49286 362 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 KRBOX4Q5JUW0 171 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 MINOS1Q5TGZ0 78 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 XAF1Q6GPH4 301 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 OR52W1Q6IF63 320 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 ABHD12Q8N2K0 398 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 SETD9Q8NE22 299 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 CORO2AQ92828 525 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 RANBP3Q9H6Z4 567 aaPredicted RBP16.75■□□□□ 0.27
CLN3-219ENST00000565778 C8orf4Q9NR00 106 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms