RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 DTX3Q8N9I9 347 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 SMIM4Q8WVI0 70 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 ARHGAP5-AS1Q96IT6 56 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 SOSTQ9BQB4 213 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 PECRQ9BY49 303 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 DNTTIP1Q9H147 329 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 CHODLQ9H9P2 273 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 SEBOXQ9HB31 216 aaPredicted RBP10.77□□□□□ -0.69
CLK3-214ENST00000564096 PALMDQ9NP74 551 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.77□□□□□ -0.694e-6■■■□□ 18.6
CLK3-214ENST00000564096 TREM2Q9NZC2 230 aa10.77□□□□□ -0.69
CLK3-214ENST00000564096 RAI1Q7Z5J4 1906 aaPredicted RBP10.77□□□□□ -0.69
CLK3-214ENST00000564096 GABARAPH6UMI1 98 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.76□□□□□ -0.69
CLK3-214ENST00000564096 SIRPB1O00241 398 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 FSTL3O95633 263 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 CD3GP09693 182 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 GNB3P16520 340 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 DUSP1P28562 367 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 CBX5P45973 191 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 SCN1BQ07699 218 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 ZNF260Q3ZCT1 412 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 CDNFQ49AH0 187 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 HACD4Q5VWC8 232 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 STUMQ69YW2 141 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 C16orf87Q6PH81 154 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 BIVMQ86UB2 503 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 ASCC1Q8N9N2 400 aaKnown RBP10.76□□□□□ -0.69
CLK3-214ENST00000564096 FCAMRQ8WWV6 532 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 RAB1CQ92928 201 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 DPCDQ9BVM2 203 aaPredicted RBP10.76□□□□□ -0.69
CLK3-214ENST00000564096 C12orf4Q9NQ89 552 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 IFT46Q9NQC8 304 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 CACNG2Q9Y698 323 aa10.76□□□□□ -0.69
CLK3-214ENST00000564096 IGHV3OR15-7A0A075B7D8 119 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 ISPDA4D126 451 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 RFPL4AA6NLU0 287 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 RFPL4AL1F8VTS6 287 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 H7C1Q1 480 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 HSPB6O14558 160 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 NDUFA2O43678 99 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 GSTZ1O43708 216 aaPredicted RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 RP2O75695 350 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 HLA-DQB1P01920 261 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 MELTFP08582 738 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 PSG2P11465 335 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 PRDX2P32119 198 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 GABRA2P47869 451 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 AP3S2P59780 193 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 SSBP1Q04837 148 aaKnown RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 DCTN2Q13561 401 aaKnown RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 CARTPTQ16568 116 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 PLAC9Q5JTB6 97 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 SHEQ5VZ18 495 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 SFRP4Q6FHJ7 346 aaPredicted RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 SLC36A1Q7Z2H8 476 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 C6orf201Q7Z4U5 140 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 TRAPPC6BQ86SZ2 158 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 OR8H2Q8N162 312 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 ZNF561Q8N587 486 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 SUMF2Q8NBJ7 301 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 IGFBPL1Q8WX77 278 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 ST8SIA4Q92187 359 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 YIPF5Q969M3 257 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 ABHD1Q96SE0 405 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 RIMS4Q9H426 269 aaPredicted RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 ZNF665Q9H7R5 613 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 ZMAT3Q9HA38 289 aaKnown RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 CHMP1AQ9HD42 196 aaPredicted RBP10.75□□□□□ -0.69
CLK3-214ENST00000564096 ETAA1Q9NY74 926 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 MAST4O15021 2626 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 COL12A1Q99715 3063 aa10.75□□□□□ -0.69
CLK3-214ENST00000564096 IGKV1D-17A0A075B6S4 117 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 J3QRK9 145 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 SLC33A1O00400 549 aaPredicted RBP10.74□□□□□ -0.69
CLK3-214ENST00000564096 PPIHO43447 177 aaKnown RBP10.74□□□□□ -0.69
CLK3-214ENST00000564096 GSTT2BP0CG30 244 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 RCVRNP35243 200 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 ATP5J2P56134 94 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 TMEM50BP56557 158 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 TMEM33P57088 247 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 IL13RA1P78552 427 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 COL10A1Q03692 680 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 PDCD1Q15116 288 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 RNASE12Q5GAN4 147 aaKnown RBP10.74□□□□□ -0.69
CLK3-214ENST00000564096 SIGIRRQ6IA17 410 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 Q6P435 159 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 DCDC5Q6ZRR9 648 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 MOB1BQ7L9L4 216 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 SPICQ8N5J4 248 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 C19orf18Q8NEA5 215 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 DEFB108BQ8NET1 73 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 ANGPTL6Q8NI99 470 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 NUDCD2Q8WVJ2 157 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 SDSLQ96GA7 329 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 CMSS1Q9BQ75 279 aaKnown RBP10.74□□□□□ -0.69
CLK3-214ENST00000564096 SULT4A1Q9BR01 284 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 FAM234AQ9H0X4 552 aa10.74□□□□□ -0.69
CLK3-214ENST00000564096 ZNF701Q9NV72 531 aaPredicted RBP10.74□□□□□ -0.69
CLK3-214ENST00000564096 DCAF16Q9NXF7 216 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms