RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RBP2P50120 134 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 SOHLH1Q5JUK2 328 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 ACER2Q5QJU3 275 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 GPR157Q5UAW9 335 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 LGI3Q8N145 548 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 COMMD1Q8N668 190 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 SLC39A7Q92504 469 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 PBDC1Q9BVG4 233 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 SUCNR1Q9BXA5 334 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 BCAT2O15382 392 aaPredicted RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 EIF1BO60739 113 aaKnown RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 OR2C1O95371 312 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 B4GALT1P15291 398 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 RPS23P62266 143 aaKnown RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 GNMTQ14749 295 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 MAML2Q8IZL2 1156 aaPredicted RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 ZIC4Q8N9L1 334 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 SUMF2Q8NBJ7 301 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 OR2G3Q8NGZ4 309 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 ALKBH3Q96Q83 286 aaPredicted RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 TUBA4BQ9H853 241 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 A0A1W2PQM1 296 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 DKK1O94907 266 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 FBP1P09467 338 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 NR2C1P13056 603 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 DTYMKP23919 212 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 RPS10P46783 165 aaKnown RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 HIST1H3AP68431 136 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 HAGHQ16775 308 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 HIST2H3PS2Q5TEC6 136 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 HIST2H3AQ71DI3 136 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 SPSB1Q96BD6 273 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 ZNF442Q9H7R0 627 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 WNT16Q9UBV4 365 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 HSF4Q9ULV5 492 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 URGCP-MRPS24S4R325 110 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 TP53I11O14683 189 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 OR7C1O76099 320 aaPredicted RBP11.43□□□□□ -0.58
CLN3-210ENST00000563874 YIF1AO95070 293 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 NRASP01111 189 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 NTF4P34130 210 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 AFF3P51826 1226 aaKnown RBP11.43□□□□□ -0.58
CLN3-210ENST00000563874 HERV-K104P61576 105 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 IL13RA2Q14627 380 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 OSR2Q8N2R0 312 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 TMEM217Q8N7C4 229 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 BOD1Q96IK1 185 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 SRXN1Q9BYN0 137 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 ZNF700Q9H0M5 742 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 ZNF286AQ9HBT8 521 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 CBY1Q9Y3M2 126 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 A0A0J9YW62 118 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 IGSF23A1L1A6 192 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 K7N7A8 449 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 AP4M1O00189 453 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 SSSCA1O60232 199 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 ATP6V0CP27449 155 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 SUCLG1P53597 346 aaKnown RBP11.43□□□□□ -0.58
CLN3-210ENST00000563874 EIF3IQ13347 325 aaKnown RBP11.43□□□□□ -0.58
CLN3-210ENST00000563874 RHEBQ15382 184 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 SPIN3Q5JUX0 258 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 OR2C3Q8N628 320 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 EDARADDQ8WWZ3 215 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 SYT3Q9BQG1 590 aa11.43□□□□□ -0.58
CLN3-210ENST00000563874 STRAPQ9Y3F4 350 aaKnown RBP11.43□□□□□ -0.58
CLN3-210ENST00000563874 CST7O76096 145 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 CRYGSP22914 178 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 CCL7P80098 99 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 CNN3Q15417 329 aaKnown RBP11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZNF468Q5VIY5 522 aaPredicted RBP11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZNF343Q6P1L6 599 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 LRTM2Q8N967 370 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 TMEM171Q8WVE6 324 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 TCTEX1D2Q8WW35 142 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 PIGCQ92535 297 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 FSCN3Q9NQT6 498 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 FOXD3Q9UJU5 478 aaPredicted RBP11.42□□□□□ -0.58
CLN3-210ENST00000563874 DKKL1Q9UK85 242 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZNF724A8MTY0 619 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZIC3O60481 467 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZNF32P17041 273 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 HTR5AP47898 357 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 ADAMTS20P59510 1910 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 CXorf66Q5JRM2 361 aaPredicted RBP11.42□□□□□ -0.58
CLN3-210ENST00000563874 FAM27BQ5VT28 67 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZNF385CQ66K41 422 aaPredicted RBP11.42□□□□□ -0.58
CLN3-210ENST00000563874 CYB5R2Q6BCY4 276 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 OR4D5Q8NGN0 318 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 MOB3AQ96BX8 217 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 NTNG2Q96CW9 530 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 ZPBPQ9BS86 351 aa11.42□□□□□ -0.58
CLN3-210ENST00000563874 IGHV5-10-1A0A0J9YXX1 117 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 C3orf85A0A1B0GTC6 90 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 H0YL77 283 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 SYNGR3O43761 229 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 SRFP11831 508 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 EIF2S3P41091 472 aaKnown RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 RAB5CP51148 216 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 RUNX1Q01196 453 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 AARDQ4LEZ3 155 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms