RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 OR4S1Q8NGB4 309 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 OR11H6Q8NGC7 330 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 OR4C13Q8NGP0 309 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 APH1BQ8WW43 257 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 MALSU1Q96EH3 234 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 CPNE2Q96FN4 548 aaPredicted RBP13.67□□□□□ -0.22
CLK3-210ENST00000563112 PDCD1LG2Q9BQ51 273 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 ZNF649Q9BS31 505 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 FGF20Q9NP95 211 aaPredicted RBP13.67□□□□□ -0.22
CLK3-210ENST00000563112 ABCB10Q9NRK6 738 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 FBLN5Q9UBX5 448 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 IGKV1-12A0A0C4DH73 117 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 FAM90A8PA6NJQ4 464 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 E9PI62 339 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 MAGEB3O15480 346 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 PSPNO60542 156 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 IGKV1D-12P01611 117 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 ZNF44P15621 663 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 DCKP27707 260 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 P2RX3P56373 397 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 KRTAP10-3P60369 221 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 SCN1BQ07699 218 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 KISS1Q15726 138 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 TTC23Q5W5X9 447 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 ZNF626Q68DY1 528 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 TMPRSS11AQ6ZMR5 421 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 LHFPL4Q7Z7J7 247 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 PARP16Q8N5Y8 322 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 JAM3Q9BX67 310 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 C8orf4Q9NR00 106 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 UBE2J1Q9Y385 318 aaPredicted RBP13.66□□□□□ -0.22
CLK3-210ENST00000563112 SESN1Q9Y6P5 492 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 WNK1Q9H4A3 2382 aa13.66□□□□□ -0.22
CLK3-210ENST00000563112 VWFP04275 2813 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 TRGV10A0A0A0MS01 117 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 VGLL3A8MV65 326 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 ODF3BA8MYP8 253 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 WBP4O75554 376 aaKnown RBP13.65□□□□□ -0.22
CLK3-210ENST00000563112 OR2H2O95918 312 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 CD2P06729 351 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 LIMS3P0CW19 117 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 LIMS4P0CW20 117 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 RAB3AP20336 220 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 PAX6P26367 422 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 KIR2DS4P43632 304 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 OR3A1P47881 315 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 FAM189A2Q15884 450 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 SMN1Q16637 294 aaKnown RBP13.65□□□□□ -0.22
CLK3-210ENST00000563112 CCDC58Q4VC31 144 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 PLA1AQ53H76 456 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 RPL22L1Q6P5R6 122 aaKnown RBP13.65□□□□□ -0.22
CLK3-210ENST00000563112 C11orf88Q6PI97 169 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 TCF23Q7RTU1 214 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 CHST4Q8NCG5 386 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 SETD9Q8NE22 299 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 GPER1Q99527 375 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 NPFFR1Q9GZQ6 430 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 GAL3ST2Q9H3Q3 398 aa13.65□□□□□ -0.22
CLK3-210ENST00000563112 RANBP3Q9H6Z4 567 aaPredicted RBP13.65□□□□□ -0.22
CLK3-210ENST00000563112 DEGS1O15121 323 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 LMO1P25800 156 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 MED21Q13503 144 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 SSX2Q16385 188 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 LRRC36Q1X8D7 754 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 ZNF691Q5VV52 312 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 ASPHD2Q6ICH7 369 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 OR52W1Q6IF63 320 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 RNF144BQ7Z419 303 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 PACRGLQ8N7B6 248 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 OR2T6Q8NHC8 308 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 RPS4Y2Q8TD47 263 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 GPR148Q8TDV2 347 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 CYGBQ8WWM9 190 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 CDCA4Q9BXL8 241 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 TMEM133Q9H2Q1 129 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 CHCHD3Q9NX63 227 aaKnown RBP13.64□□□□□ -0.23
CLK3-210ENST00000563112 PITPNC1Q9UKF7 332 aa13.64□□□□□ -0.23
CLK3-210ENST00000563112 ERICH4A6NGS2 130 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 H3BUI4 141 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 MYL12AP19105 171 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 SOX2P48431 317 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 MTNR1BP49286 362 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 GTF2A1P52655 376 aaPredicted RBP13.63□□□□□ -0.23
CLK3-210ENST00000563112 MINOS1Q5TGZ0 78 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 CRIP3Q6Q6R5 217 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 SATL1Q86VE3 508 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 DHRSXQ8N5I4 330 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 NDNFQ8TB73 568 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 CNIH3Q8TBE1 160 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 PIFOQ8TCI5 191 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 CLEC7AQ9BXN2 247 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 MMP27Q9H306 513 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 TAS2R3Q9NYW6 316 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 EXOSC1Q9Y3B2 195 aaKnown RBP13.63□□□□□ -0.23
CLK3-210ENST00000563112 MINOS1-NBL1R4GNA1 71 aa13.63□□□□□ -0.23
CLK3-210ENST00000563112 IGHV2-26A0A0B4J1V2 119 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 A0A0G2JK05 382 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 ETV1P50549 477 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 RAB13P51153 203 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 ZP1P60852 638 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms