RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 C19orf18Q8NEA5 215 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 WFDC11Q8NEX6 87 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 OR56B1Q8NGI3 324 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 OR10K1Q8NGX5 313 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 FAM46BQ96A09 425 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 CMTM3Q96MX0 182 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 NEDD4LQ96PU5 975 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 CCL13Q99616 98 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 NARFLQ9H6Q4 476 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 IFT22Q9H7X7 185 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 LIN7BQ9HAP6 207 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 CLN8Q9UBY8 286 aa7.71□□□□□ -1.18
LDLR-210ENST00000559340 IGKV1D-17A0A075B6S4 117 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 IGHV4-61A0A0C4DH41 118 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 A0A0G2JK05 382 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 TMEM272A0A1B0GTI8 110 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 A0A1W2PPH5 198 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 SMIM30A4D0T7 59 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 B4DSR2 109 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 MCRIP1C9JLW8 97 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 F5H0A9 414 aaPredicted RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 F8VVB4 439 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 F8VWA3 439 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 H3BMQ9 156 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 OR7C1O76099 320 aaPredicted RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 FOSL1P15407 271 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 FUT3P21217 361 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 LMO1P25800 156 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 SNU13P55769 128 aaKnown RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 CAV3P56539 151 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 CLDN12P56749 244 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 LMO4P61968 165 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 RPS27AP62979 156 aaKnown RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 COL10A1Q03692 680 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 ATAD3CQ5T2N8 411 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 CYB5R2Q6BCY4 276 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 RAB12Q6IQ22 244 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 BATF2Q8N1L9 274 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 CD177Q8N6Q3 437 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 ASCC1Q8N9N2 400 aaKnown RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 LINC01356Q8N9X3 169 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 TMEM185AQ8NFB2 350 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 DMRTB1Q96MA1 342 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 C1orf147Q96MC9 270 aaPredicted RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 GAFA1Q96PS6 74 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 NKX3-1Q99801 234 aaPredicted RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 SSBP3Q9BWW4 388 aaPredicted RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 TM2D1Q9BX74 207 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 BARHL1Q9BZE3 327 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 BANF2Q9H503 90 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 SLC25A10Q9UBX3 287 aaPredicted RBP7.7□□□□□ -1.18
LDLR-210ENST00000559340 LPAR3Q9UBY5 353 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 ZNF222Q9UK12 451 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 ADAM30Q9UKF2 790 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 SPATA2Q9UM82 520 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 CSMD2Q7Z408 3487 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 MTORP42345 2549 aa7.7□□□□□ -1.18
LDLR-210ENST00000559340 TRBV23-1A0A0A0MS06 115 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 A0A0A6YYH2 397 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 DPPA5A6NC42 116 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 A6NJ64 397 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 H7C1Q1 480 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 K7N7A8 449 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 DVL1O14640 695 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 MGST3O14880 152 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 GEMIN2O14893 280 aaKnown RBP7.69□□□□□ -1.18
LDLR-210ENST00000559340 OR2H2O95918 312 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 TK1P04183 234 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 LIPFP07098 398 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 SLC2A2P11168 524 aaPredicted RBP7.69□□□□□ -1.18
LDLR-210ENST00000559340 NDUFB7P17568 137 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 GABRR1P24046 479 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 DUSP1P28562 367 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 TGFBR1P36897 503 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 QRFPP83859 136 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 TAF9Q16594 264 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 PIGYQ3MUY2 71 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 PAN3Q58A45 887 aaKnown RBP7.69□□□□□ -1.18
LDLR-210ENST00000559340 WDR25Q64LD2 544 aaPredicted RBP7.69□□□□□ -1.18
LDLR-210ENST00000559340 Q6P435 159 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 LYPD2Q6UXB3 125 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 GDPD3Q7L5L3 318 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 TMEM104Q8NE00 496 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 NDNFQ8TB73 568 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 NEK7Q8TDX7 302 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 RAB40AQ8WXH6 277 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 SEH1LQ96EE3 360 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 S100A16Q96FQ6 103 aaKnown RBP7.69□□□□□ -1.18
LDLR-210ENST00000559340 C1orf159Q96HA4 380 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 Q96M66 194 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 DIABLOQ9NR28 239 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 CCDC59Q9P031 241 aaKnown RBP7.69□□□□□ -1.18
LDLR-210ENST00000559340 OR5V1Q9UGF6 321 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 MAB21L2Q9Y586 359 aa7.69□□□□□ -1.18
LDLR-210ENST00000559340 MAP1AP78559 2803 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 LOC105371242A0A075B767 164 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 TRAV20A0A0B4J274 112 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 PPIAL4CA0A0B4J2A2 164 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 A0A1W2PP11 408 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 A8MXK9 166 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms