RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IGHV1OR15-9A0A0B4J2B8 117 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 CEACAM18A8MTB9 384 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 E5RGE8 158 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 DHRS3O75911 302 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 FABP4P15090 132 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 RPS16P62249 146 aaKnown RBP10.7□□□□□ -0.7
LDLR-205ENST00000557933 DLK1P80370 383 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 FAM3AP98173 230 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 ZP4Q12836 540 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 FAM89BQ8N5H3 189 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 NECAP1Q8NC96 275 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 HPSE2Q8WWQ2 592 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 PIGCQ92535 297 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 EGLN1Q9GZT9 426 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 OR51B6Q9H340 312 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 NSG2Q9Y328 171 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 HDGFL3Q9Y3E1 203 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 CHD3Q12873 2000 aaKnown RBP10.7□□□□□ -0.7
LDLR-205ENST00000557933 HSD17B6O14756 317 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 SOD3P08294 240 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 FOLR2P14207 255 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 S100PP25815 95 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 GALNSP34059 522 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 HAAOP46952 286 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 ZNF501Q96CX3 271 aaPredicted RBP10.7□□□□□ -0.7
LDLR-205ENST00000557933 SSX3Q99909 188 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 GLRX2Q9NS18 164 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 ST3GAL6Q9Y274 331 aa10.7□□□□□ -0.7
LDLR-205ENST00000557933 LILRA5A6NI73 299 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 SERPINE3A8MV23 424 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ST8SIA3O43173 380 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 TMEM50AO95807 157 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 P2RY1P47900 373 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ENDOGQ14249 297 aaKnown RBP10.69□□□□□ -0.7
LDLR-205ENST00000557933 NKAIN1Q4KMZ8 207 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ZNF880Q6PDB4 577 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 PRR18Q8N4B5 295 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 HAS2Q92819 552 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ANAPC10Q9UM13 185 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 FOXI3A8MTJ6 420 aaPredicted RBP10.69□□□□□ -0.7
LDLR-205ENST00000557933 IFNL4K9M1U5 179 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 TNFSF11O14788 317 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 CTSDP07339 412 aaPredicted RBP10.69□□□□□ -0.7
LDLR-205ENST00000557933 CHATP28329 748 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 GAMTQ14353 236 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 MPV17LQ2QL34 196 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ZNF574Q6ZN55 896 aaPredicted RBP10.69□□□□□ -0.7
LDLR-205ENST00000557933 Q96M66 194 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 WFIKKN1Q96NZ8 548 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 TUBD1Q9UJT1 453 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ICE1Q9Y2F5 2266 aa10.69□□□□□ -0.7
LDLR-205ENST00000557933 ADAM20O43506 726 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 BMP5P22003 454 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 NTF4P34130 210 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 PTGDSP41222 190 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 TMEM267Q0VDI3 215 aaPredicted RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 LCN15Q6UWW0 184 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 SLC25A45Q8N413 288 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 FGFBP3Q8TAT2 258 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 NEK7Q8TDX7 302 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 CHST5Q9GZS9 411 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 GNG13Q9P2W3 67 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 MYOTQ9UBF9 498 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 UBE2J1Q9Y385 318 aaPredicted RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 TNRC6BQ9UPQ9 1833 aaKnown RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 GTF3C1Q12789 2109 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 MSR1P21757 451 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 TUBG1P23258 451 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 S100A2P29034 98 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 RPS18P62269 152 aaKnown RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 RAB11AP62491 216 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 SURF2Q15527 256 aaPredicted RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 HLA-BQ31612 363 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 WDR25Q64LD2 544 aaPredicted RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 CALHM1Q8IU99 346 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 SSC4DQ8WTU2 575 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 SNX22Q96L94 193 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 ULBP2Q9BZM5 246 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 ATMQ13315 3056 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 RBFOX3A6NFN3 312 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 NPIPA2E9PIF3 369 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 LMO7DNF2Z398 122 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 NPIPA3F8WFD2 350 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 DUX1O43812 170 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 GAPDHP04406 335 aaKnown RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 HOXB1P14653 301 aaPredicted RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 DYNLT3P51808 116 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 GNMTQ14749 295 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 HEPN1Q6WQI6 88 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 ZNF429Q86V71 674 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 DMRTC2Q8IXT2 367 aaPredicted RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 OR2C3Q8N628 320 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 OR51H1Q8NH63 302 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 MSI2Q96DH6 328 aaKnown RBP10.68□□□□□ -0.7
LDLR-205ENST00000557933 BORCS8Q96FH0 119 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 NECAP2Q9NVZ3 263 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 PLA2G3Q9NZ20 509 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 FBLN5Q9UBX5 448 aa10.68□□□□□ -0.7
LDLR-205ENST00000557933 GPR137BO60478 399 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BKO60814 126 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms