RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ZNF430Q9H8G1 570 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-205ENST00000550592 ZNF355PQ9NSJ1 428 aa2.93□□□□□ -1.94
LIMA1-205ENST00000550592 MTFP1Q9UDX5 166 aa2.93□□□□□ -1.94
LIMA1-205ENST00000550592 PRO0461Q9UI25 63 aa2.93□□□□□ -1.94
LIMA1-205ENST00000550592 STOML2Q9UJZ1 356 aa2.93□□□□□ -1.94
LIMA1-205ENST00000550592 YTHDF2Q9Y5A9 579 aaKnown RBP2.93□□□□□ -1.94
LIMA1-205ENST00000550592 GOLGA6L10A6NI86 522 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 L7N2F9 121 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 E2F6O75461 281 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 HPRT1P00492 218 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 IFNW1P05000 195 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 STAG3L3P0CL85 134 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 CSNK2A2P19784 350 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 RAB4AP20338 218 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 UBE2MP61081 183 aaKnown RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 TFAMQ00059 246 aaKnown RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 TFF3Q07654 80 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 EIF4EBP1Q13541 118 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 TRMT5Q32P41 509 aaKnown RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 HHATQ5VTY9 493 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 PRMT9Q6P2P2 845 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 WDR86Q86TI4 376 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 COX18Q8N8Q8 333 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 TMEM161BQ8NDZ6 487 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 ERMNQ8TAM6 284 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 WFDC5Q8TCV5 224 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 LRRC29Q8WV35 223 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 NRBF2Q96F24 287 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 SMARCD1Q96GM5 515 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 CAMK2N2Q96S95 79 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 PIGUQ9H490 435 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 EDA2RQ9HAV5 297 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 DDX19AQ9NUU7 478 aaKnown RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 AHSPQ9NZD4 102 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 MYEF2Q9P2K5 600 aaKnown RBP2.92□□□□□ -1.94
LIMA1-205ENST00000550592 ZNF835Q9Y2P0 537 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 FADS3Q9Y5Q0 445 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 TMEM14AQ9Y6G1 99 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 ZANQ9Y493 2812 aa2.92□□□□□ -1.94
LIMA1-205ENST00000550592 FREM1Q5H8C1 2179 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 A0A1W2PRD5 423 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ZNF705GA8MUZ8 300 aaPredicted RBP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 FAM25EA8MYX2 175 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 F8VZ95 297 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 DNASE2O00115 360 aaPredicted RBP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 AKR7A2O43488 359 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 CDC40O60508 579 aaKnown RBP eCLIP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 SEMA3DO95025 777 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 WISP3O95389 354 aaPredicted RBP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 DTYMKP23919 212 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 MAGEA1P43355 309 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ACOT2P49753 483 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 CLDN8P56748 225 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 MAP3K7CLP57077 242 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 SYNJ2BPP57105 145 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 LINC00315P59091 139 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 RPS23P62266 143 aaKnown RBP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 STK11Q15831 433 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 NANOGP8Q6NSW7 305 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ZNF695Q8IW36 515 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 RIMKLAQ8IXN7 391 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ARHGAP18Q8N392 663 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 OR11H7Q8NGC8 314 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 COQ8AQ8NI60 647 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 OR51E1Q8TCB6 317 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 C9orf72Q96LT7 481 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 RNF145Q96MT1 663 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ZNF317Q96PQ6 595 aaPredicted RBP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 TIPINQ9BVW5 301 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 CLSTN2Q9H4D0 955 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 PLEKHF2Q9H8W4 249 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 CRLF2Q9HC73 371 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 NECAP2Q9NVZ3 263 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ZMAT5Q9UDW3 170 aaKnown RBP2.91□□□□□ -1.94
LIMA1-205ENST00000550592 CFAP45Q9UL16 551 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 DOCK10Q96BY6 2186 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 ROS1P08922 2347 aa2.91□□□□□ -1.94
LIMA1-205ENST00000550592 IGLV4-60A0A075B6I1 120 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 IGKV2-28A0A075B6P5 120 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 TRAV17A0A0B4J275 112 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 A0A0J9YXV3 536 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 GOLGA6L7A0A1B0GV03 622 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 NME4O00746 187 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 BET1O15155 118 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 TOX3O15405 576 aaPredicted RBP2.9□□□□□ -1.95
LIMA1-205ENST00000550592 ZNF207O43670 478 aaKnown RBP2.9□□□□□ -1.95
LIMA1-205ENST00000550592 SMC2O95347 1197 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 OXTP01178 125 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 IGKV2D-28P01615 120 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 RALBP11234 206 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 USF1P22415 310 aaPredicted RBP2.9□□□□□ -1.95
LIMA1-205ENST00000550592 IL32P24001 234 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 RFC3P40938 356 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 RPS15AP62244 130 aaKnown RBP2.9□□□□□ -1.95
LIMA1-205ENST00000550592 C5orf47Q569G3 176 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 FBXW9Q5XUX1 488 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 PLCXD3Q63HM9 321 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 ANGPTL8Q6UXH0 198 aa2.9□□□□□ -1.95
LIMA1-205ENST00000550592 CDKL3Q8IVW4 592 aaPredicted RBP2.9□□□□□ -1.95
LIMA1-205ENST00000550592 SNX31Q8N9S9 440 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms