RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 C11orf44Q8N8P7 122 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 FAM110DQ8TAY7 271 aaPredicted RBP13.2□□□□□ -0.3
VPS29-207ENST00000549970 MALSU1Q96EH3 234 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 ZCCHC4Q9H5U6 513 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 ERVK13-1Q9NX77 482 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 FOXJ3Q9UPW0 622 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 TCF19Q9Y242 345 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 SESN1Q9Y6P5 492 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 PRKDCP78527 4128 aaKnown RBP13.2□□□□□ -0.3
VPS29-207ENST00000549970 KIAA2026Q5HYC2 2103 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 IGHV2-26A0A0B4J1V2 119 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 MEGF11A6BM72 1044 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 E9PI62 339 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 SH2D1BO14796 132 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 KDM4BO94953 1096 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 ZFPL1O95159 310 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 MT-ND2P03891 347 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 HCKP08631 526 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 P2RX3P56373 397 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 SCN1BQ07699 218 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 RAB40BQ12829 278 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 HERPUD1Q15011 391 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 TMEM219Q86XT9 240 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 KLHDC1Q8N7A1 406 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 OR52I1Q8NGK6 324 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 OR5AK2Q8NH90 309 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 RPS4Y2Q8TD47 263 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 TSEN15Q8WW01 171 aaKnown RBP13.19□□□□□ -0.3
VPS29-207ENST00000549970 PDCD1LG2Q9BQ51 273 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 ZNF649Q9BS31 505 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 COMMD4Q9H0A8 199 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 INPP5EQ9NRR6 644 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 FAM118AQ9NWS6 357 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 DHDHQ9UQ10 334 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 PCDHGB5Q9Y5G0 923 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 HILPDAQ9Y5L2 63 aa13.19□□□□□ -0.3
VPS29-207ENST00000549970 TMEM212A6NML5 194 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 EBAG9O00559 213 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 MMP23AO75900 390 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 BAG2O95816 211 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 CSF1P09603 554 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 ZNF44P15621 663 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 JUNBP17275 347 aaPredicted RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 ERP29P30040 261 aaKnown RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 GBX2P52951 348 aaPredicted RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 SLC34A1Q06495 639 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 PDLIM3Q53GG5 364 aaPredicted RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 C11orf88Q6PI97 169 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 CCBE1Q6UXH8 406 aaPredicted RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 NDNFQ8TB73 568 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 APH1BQ8WW43 257 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 CLEC7AQ9BXN2 247 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 TMEM133Q9H2Q1 129 aa13.18□□□□□ -0.3
VPS29-207ENST00000549970 UBE2J1Q9Y385 318 aaPredicted RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 RPL36Q9Y3U8 105 aaKnown RBP13.18□□□□□ -0.3
VPS29-207ENST00000549970 NOTCH1P46531 2555 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 TRGV10A0A0A0MS01 117 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 A6NDX4 124 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 SULT1B1O43704 296 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 CCDC159P0C7I6 412 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 TMEM225BP0DP42 221 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 VSIG10L2P0DP72 767 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 AESQ08117 197 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 MRPL28Q13084 256 aaKnown RBP13.17□□□□□ -0.3
VPS29-207ENST00000549970 HABP2Q14520 560 aaPredicted RBP13.17□□□□□ -0.3
VPS29-207ENST00000549970 KISS1Q15726 138 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 MINOS1Q5TGZ0 78 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 PRAMEF5Q5TYX0 476 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 LPCAT4Q643R3 524 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 BAIAP2L2Q6UXY1 529 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 SERPINA12Q8IW75 414 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 SAXO1Q8IYX7 474 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 OR5D14Q8NGL3 314 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 ZNF702PQ9H963 129 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 ING3Q9NXR8 418 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 MINOS1-NBL1R4GNA1 71 aa13.17□□□□□ -0.3
VPS29-207ENST00000549970 FUOMA2VDF0 154 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 FAM172BPA6NC97 362 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 F2RL2O00254 374 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 LMO1P25800 156 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 GLIPR1P48060 266 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 GTF2A1P52655 376 aaPredicted RBP13.16□□□□□ -0.3
VPS29-207ENST00000549970 ZP1P60852 638 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 IL18R1Q13478 541 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 SMN1Q16637 294 aaKnown RBP13.16□□□□□ -0.3
VPS29-207ENST00000549970 KLHL22Q53GT1 634 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 PARP16Q8N5Y8 322 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 ZNF555Q8NEP9 628 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 CDCA4Q9BXL8 241 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 GAL3ST2Q9H3Q3 398 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 MRPS18AQ9NVS2 196 aaKnown RBP13.16□□□□□ -0.3
VPS29-207ENST00000549970 PITPNC1Q9UKF7 332 aa13.16□□□□□ -0.3
VPS29-207ENST00000549970 A0A0G2JK05 382 aa13.15□□□□□ -0.3
VPS29-207ENST00000549970 ALX3O95076 343 aa13.15□□□□□ -0.3
VPS29-207ENST00000549970 RPSAP08865 295 aaKnown RBP13.15□□□□□ -0.3
VPS29-207ENST00000549970 LIMS3P0CW19 117 aa13.15□□□□□ -0.3
VPS29-207ENST00000549970 LIMS4P0CW20 117 aa13.15□□□□□ -0.3
VPS29-207ENST00000549970 CDK2P24941 298 aa13.15□□□□□ -0.3
VPS29-207ENST00000549970 SOX2P48431 317 aa13.15□□□□□ -0.3
VPS29-207ENST00000549970 ATXN7L3Q14CW9 347 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms