RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 EXTL1Q92935 676 aa15.49■□□□□ 0.07
VIM-209ENST00000544301 HS3ST6Q96QI5 342 aa15.49■□□□□ 0.07
VIM-209ENST00000544301 DNAJC13O75165 2243 aa15.49■□□□□ 0.07
VIM-209ENST00000544301 TAAR5O14804 337 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 AADACP22760 399 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 RPL12P30050 165 aaKnown RBP15.48■□□□□ 0.07
VIM-209ENST00000544301 FGF12P61328 243 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 SMCO1Q147U7 214 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 ATP1A1-AS1Q5TC04 95 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 RPL7L1Q6DKI1 246 aaKnown RBP15.48■□□□□ 0.07
VIM-209ENST00000544301 IL22RA1Q8N6P7 574 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 LRTM2Q8N967 370 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 ZFP62Q8NB50 900 aaPredicted RBP15.48■□□□□ 0.07
VIM-209ENST00000544301 RSRP1Q9BUV0 290 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 SUCNR1Q9BXA5 334 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 PRSS50Q9UI38 385 aa15.48■□□□□ 0.07
VIM-209ENST00000544301 ZNF732B4DXR9 585 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 PLP2Q04941 152 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 LIAT1Q6ZQX7 453 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 OR5L1Q8NGL2 311 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 OR11L1Q8NGX0 322 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 NARS2Q96I59 477 aaKnown RBP15.47■□□□□ 0.07
VIM-209ENST00000544301 PRRX2Q99811 253 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 DEFB127Q9H1M4 99 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 ZC4H2Q9NQZ6 224 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 MTCH1Q9NZJ7 389 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 LSM5Q9Y4Y9 91 aaKnown RBP15.47■□□□□ 0.07
VIM-209ENST00000544301 TNRC6AQ8NDV7 1962 aaKnown RBP15.47■□□□□ 0.07
VIM-209ENST00000544301 CELSR3Q9NYQ7 3312 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 K7EPK0 472 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 TSPAN4O14817 238 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 CD46P15529 392 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 HERV-K104P61576 105 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 IGSF11Q5DX21 431 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 LYZL2Q7Z4W2 148 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 FAM71E2Q8N5Q1 922 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 C18orf12Q96KH6 178 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 SYT3Q9BQG1 590 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 TMEM9BQ9NQ34 198 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 PLSCR2Q9NRY7 297 aa15.47■□□□□ 0.07
VIM-209ENST00000544301 Q6ZS49 121 aa15.46■□□□□ 0.07
VIM-209ENST00000544301 GLYATL2Q8WU03 294 aa15.46■□□□□ 0.07
VIM-209ENST00000544301 MSI2Q96DH6 328 aaKnown RBP15.46■□□□□ 0.07
VIM-209ENST00000544301 LRRC46Q96FV0 321 aa15.46■□□□□ 0.07
VIM-209ENST00000544301 ZNF552Q9H707 407 aaPredicted RBP15.46■□□□□ 0.07
VIM-209ENST00000544301 C12orf49Q9H741 205 aa15.46■□□□□ 0.07
VIM-209ENST00000544301 IL36RNQ9UBH0 155 aa15.46■□□□□ 0.07
VIM-209ENST00000544301 SHANK1Q9Y566 2161 aa15.46■□□□□ 0.07
VIM-209ENST00000544301 CD300LBA8K4G0 201 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 PRSS44E7EML9 344 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 H7C1Q1 480 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 LRP3O75074 770 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 SCGB1D2O95969 90 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 PPYP01298 95 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 MBPP02686 304 aaPredicted RBP15.46■□□□□ 0.06
VIM-209ENST00000544301 ZNF806P0C7X5 589 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 GLI4P10075 376 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 EIF5AP63241 154 aaKnown RBP15.46■□□□□ 0.06
VIM-209ENST00000544301 DEFA5Q01523 94 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 ZNF273Q14593 569 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 TGIF1Q15583 401 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 MST1LQ2TV78 715 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 HIKESHIQ53FT3 197 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 MKXQ8IYA7 352 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 OR5T2Q8NGG2 359 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 OR5A2Q8NGI9 324 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 ARL11Q969Q4 196 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 WDYHV1Q96HA8 205 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 OPA3Q9H6K4 179 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 TAF9BQ9HBM6 251 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 RCC2Q9P258 522 aaKnown RBP15.46■□□□□ 0.06
VIM-209ENST00000544301 LPAR3Q9UBY5 353 aa15.46■□□□□ 0.06
VIM-209ENST00000544301 ZNF705EA8MWA4 302 aaPredicted RBP15.45■□□□□ 0.06
VIM-209ENST00000544301 TRAPPC2LH3BP13 241 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 IL18BPO95998 194 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 RCC1P18754 421 aaPredicted RBP15.45■□□□□ 0.06
VIM-209ENST00000544301 WNT5AP41221 380 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 ARHGDIBP52566 201 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 HIST1H2AAQ96QV6 131 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 Q9N2K0 584 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 AMDHD2Q9Y303 409 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 ARHGAP21Q5T5U3 1957 aa15.45■□□□□ 0.06
VIM-209ENST00000544301 ARID1AO14497 2285 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 TMEM218A2RU14 115 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 ARGFXA6NJG6 315 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 NAPSAO96009 420 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 APLNRP35414 380 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 SRSF7Q16629 238 aaKnown RBP eCLIP15.44■□□□□ 0.06
VIM-209ENST00000544301 RNFT1Q5M7Z0 435 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 C5orf24Q7Z6I8 188 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 LGI3Q8N145 548 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 CCDC71LQ8N9Z2 235 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 OR1K1Q8NGR3 316 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 LHFPL5Q8TAF8 219 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 OR5P3Q8WZ94 311 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 FAM86C1Q9NVL1 165 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 SPRR3Q9UBC9 169 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 FBXL17Q9UF56 701 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 NUDT19A8MXV4 375 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 PHF1O43189 567 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms