RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 DUX4L5P0CJ88 424 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 DUX4L6P0CJ89 424 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 DUX4L7P0CJ90 424 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 ZNF44P15621 663 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 LMO1P25800 156 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 SEC61A1P61619 476 aaKnown RBP14.24□□□□□ -0.13
LIG1-204ENST00000542460 GNB2P62879 340 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 RPS27AP62979 156 aaKnown RBP14.24□□□□□ -0.13
LIG1-204ENST00000542460 SCN1BQ07699 218 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 MPV17LQ2QL34 196 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 WDR25Q64LD2 544 aaPredicted RBP14.24□□□□□ -0.13
LIG1-204ENST00000542460 Q6P435 159 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 DUX4L9Q6RFH8 374 aaPredicted RBP14.24□□□□□ -0.13
LIG1-204ENST00000542460 C18orf12Q96KH6 178 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 Q96M66 194 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 SSBP3Q9BWW4 388 aaPredicted RBP14.24□□□□□ -0.13
LIG1-204ENST00000542460 TMEM59Q9BXS4 323 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 RBM38Q9H0Z9 239 aaKnown RBP14.24□□□□□ -0.13
LIG1-204ENST00000542460 IFT22Q9H7X7 185 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 NDUFA13Q9P0J0 144 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 DUX4Q9UBX2 424 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 METRNQ9UJH8 293 aa14.24□□□□□ -0.13
LIG1-204ENST00000542460 A0A0B4J203 849 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 TMEM272A0A1B0GTI8 110 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 SMIM31A0A1B0GVY4 71 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A10PA6NDY2 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A18PA6NE21 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A16PA6NEW6 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A20PA6NIJ5 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A8PA6NJQ4 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A7PA6NKC0 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A22PA8MWA6 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A12PA8MX19 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A5PA8MXJ8 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A23PA8MXZ1 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM157AC9JC47 383 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 H3BMQ9 156 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 SIRPB1O00241 398 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 GPR37O15354 613 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 ZNF737O75373 536 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A15PP0C7V4 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A13PP0C7W8 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A14PP0C7W9 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM90A24PP0C7X0 464 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 RORCP51449 518 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 SPCS2Q15005 226 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 PDCD1Q15116 288 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 TAF9Q16594 264 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 ASCC1Q8N9N2 400 aaKnown RBP14.23□□□□□ -0.13
LIG1-204ENST00000542460 TMEM185AQ8NFB2 350 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 PTX4Q96A99 478 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 SNX22Q96L94 193 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 URM1Q9BTM9 101 aaKnown RBP14.23□□□□□ -0.13
LIG1-204ENST00000542460 TMUB1Q9BVT8 246 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 FAM234AQ9H0X4 552 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 SLC25A10Q9UBX3 287 aaPredicted RBP14.23□□□□□ -0.13
LIG1-204ENST00000542460 OR5V1Q9UGF6 321 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 RAB22AQ9UL26 194 aa14.23□□□□□ -0.13
LIG1-204ENST00000542460 A8MXK9 166 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 B4DSR2 109 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 H3BUI4 141 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 K7N7A8 449 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 ZNF701M0R085 212 aaPredicted RBP14.22□□□□□ -0.13
LIG1-204ENST00000542460 FOXH1O75593 365 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 OR7C1O76099 320 aaPredicted RBP14.22□□□□□ -0.13
LIG1-204ENST00000542460 TK1P04183 234 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 SELLP14151 372 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 CD99P14209 185 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 GABRR1P24046 479 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 GZMKP49863 264 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 SCAND1P57086 179 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 C11orf91Q3C1V1 193 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 OR5D13Q8NGL4 314 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 PPP1R35Q8TAP8 253 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 TM2D1Q9BX74 207 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 BARHL1Q9BZE3 327 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 ABRACLQ9P1F3 81 aa14.22□□□□□ -0.13
LIG1-204ENST00000542460 RSL24D1Q9UHA3 163 aaKnown RBP14.22□□□□□ -0.13
LIG1-204ENST00000542460 TMEM82A0PJX8 343 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 DPPA5A6NC42 116 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 SLC33A1O00400 549 aaPredicted RBP14.21□□□□□ -0.13
LIG1-204ENST00000542460 PHF1O43189 567 aaPredicted RBP14.21□□□□□ -0.13
LIG1-204ENST00000542460 PSPNO60542 156 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 FCN3O75636 299 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 INHBBP09529 407 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 IGHV4-31P0DP07 118 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 SNRPBP14678 240 aaKnown RBP14.21□□□□□ -0.13
LIG1-204ENST00000542460 FOSL1P15407 271 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 RAB6AP20340 208 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 ZFP36P26651 326 aaKnown RBP14.21□□□□□ -0.13
LIG1-204ENST00000542460 FAM189A2Q15884 450 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 CD276Q5ZPR3 534 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 C17orf107Q6ZR85 190 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 LINC01356Q8N9X3 169 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 ST8SIA4Q92187 359 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 SHARPINQ9H0F6 387 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 LPAR5Q9H1C0 372 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 SPACA1Q9HBV2 294 aa14.21□□□□□ -0.13
LIG1-204ENST00000542460 ECDO95905 644 aaPredicted RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 PAHP00439 452 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms