RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SYS1Q8N2H4 156 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 OR4K17Q8NGC6 315 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 OR4C13Q8NGP0 309 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 CACNG8Q8WXS5 425 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 ZNF649Q9BS31 505 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 HINT2Q9BX68 163 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 VSIRQ9H7M9 311 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 CA10Q9NS85 328 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 ICOSQ9Y6W8 199 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 HIVEP2P31629 2446 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 MUC19Q7Z5P9 8384 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 BAZ2AQ9UIF9 1905 aaKnown RBP1.4□□□□□ -2.18
CD44-238ENST00000534296 THADAQ6YHU6 1953 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 IGHV3-21A0A0B4J1V1 117 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 LOC100506127A0A0U1RQW1 187 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 MYBPHLA2RUH7 354 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 RBFOX3A6NFN3 312 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 C15orf65H3BRN8 121 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 hCG_2039718K7EN88 272 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 PSCAO43653 123 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 CYTH3O43739 400 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 ENTPD6O75354 484 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 SC5DO75845 299 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 VAPBO95292 243 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 SNAP29O95721 258 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 CECR9P0C854 216 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 SLC2A1P11166 492 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 GTF2F2P13984 249 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 AKR1C4P17516 323 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 ATF1P18846 271 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 CD34P28906 385 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 S100A2P29034 98 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 ATP5J2P56134 94 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 TRAM1Q15629 374 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 BCL2A1Q16548 175 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 Q3ZCU0 254 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 FBXO48Q5FWF7 155 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 AMMECR1LQ6DCA0 310 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 TMPPEQ6ZT21 453 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 DPPA2Q7Z7J5 298 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 LRRC6Q86X45 466 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 ZNF664Q8N3J9 261 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 OR8S1Q8NH09 359 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 DTD1Q8TEA8 209 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 PPWD1Q96BP3 646 aaKnown RBP1.4□□□□□ -2.19
CD44-238ENST00000534296 ZMYND19Q96E35 227 aaPredicted RBP1.4□□□□□ -2.19
CD44-238ENST00000534296 ZNF396Q96N95 335 aaPredicted RBP1.4□□□□□ -2.19
CD44-238ENST00000534296 SPACA5Q96QH8 159 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 HIGD2AQ9BW72 106 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 GABARAPL1Q9H0R8 117 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 TXNIPQ9H3M7 391 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 METTL8Q9H825 291 aaKnown RBP1.4□□□□□ -2.19
CD44-238ENST00000534296 SND1-IT1Q9HBX3 110 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 FAM60AQ9NP50 221 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 DDIT4Q9NX09 232 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 ZNF492Q9P255 531 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 KLF13Q9Y2Y9 288 aaPredicted RBP1.4□□□□□ -2.19
CD44-238ENST00000534296 TRANK1O15050 2925 aa1.4□□□□□ -2.19
CD44-238ENST00000534296 A0A1B0GW15 77 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ARGFXA6NJG6 315 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 FAM25EA8MYX2 175 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 F5H5P2 479 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 H3BP45 60 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 K7EN84 100 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 FABP7O15540 132 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 IGHV3-53P01767 116 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 IGHG2P01859 326 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 IVLP07476 585 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 TEAD1P28347 426 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 RCVRNP35243 200 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 P2RY2P41231 377 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 LGALS7P47929 136 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 HSPA13P48723 471 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 HBG1P69891 147 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 HBG2P69892 147 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 C2orf80Q0P641 193 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 TPBGQ13641 420 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 FLOT2Q14254 428 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ZNF235Q14590 738 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 GUSBP1Q15486 140 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 USF2Q15853 346 aaPredicted RBP1.39□□□□□ -2.19
CD44-238ENST00000534296 ACTL10Q5JWF8 245 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 AADACL4Q5VUY2 407 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ERICH5Q6P6B1 374 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 Q6ZQT7 251 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 OLIG3Q7RTU3 272 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ADM2Q7Z4H4 148 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 LYZL2Q7Z4W2 148 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ZNF555Q8NEP9 628 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 PHOSPHO2Q8TCD6 241 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 TMEM239Q8WW34 195 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 TMIGD2Q96BF3 282 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ZBED3Q96IU2 234 aaPredicted RBP1.39□□□□□ -2.19
CD44-238ENST00000534296 TRIB3Q96RU7 358 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 RAB1BQ9H0U4 201 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 DSN1Q9H410 356 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ASB7Q9H672 318 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 TMEM38BQ9NVV0 291 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ZNF229Q9UJW7 825 aa1.39□□□□□ -2.19
CD44-238ENST00000534296 ZNF706Q9Y5V0 76 aaPredicted RBP1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms