RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 OR2H2O95918 312 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 CPEP16870 476 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 MAPK3P27361 379 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-209ENST00000532725 BMXP51813 675 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 EMX1Q04741 257 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-209ENST00000532725 TBCEQ15813 527 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-209ENST00000532725 GPR157Q5UAW9 335 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 CDH26Q8IXH8 852 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 FAM185AQ8N0U4 392 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 C11orf42Q8N5U0 333 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 TBC1D15Q8TC07 691 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 TNFRSF14Q92956 283 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 LHX4Q969G2 390 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 SUCNR1Q9BXA5 334 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 UNKLQ9H9P5 680 aaKnown RBP16.31■□□□□ 0.2
CPSF1-209ENST00000532725 ACOT13Q9NPJ3 140 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 ING4Q9UNL4 249 aa16.31■□□□□ 0.2
CPSF1-209ENST00000532725 SF3B6Q9Y3B4 125 aaKnown RBP16.31■□□□□ 0.2
CPSF1-209ENST00000532725 A0A0G2JK05 382 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 MAS1P04201 325 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 HILS1P60008 231 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 RSU1Q15404 277 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 FAM27D1Q5T7N8 215 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 METAP1DQ6UB28 335 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-209ENST00000532725 BRD3OSQ6XYD6 125 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 TMEM91Q6ZNR0 172 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 CEACAM19Q7Z692 300 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 PHC2Q8IXK0 858 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 OR4S1Q8NGB4 309 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 OR51T1Q8NGJ9 327 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 OR10K1Q8NGX5 313 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 TMEM203Q969S6 136 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 ZNF48Q96MX3 618 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-209ENST00000532725 PPIL3Q9H2H8 161 aaKnown RBP16.3■□□□□ 0.2
CPSF1-209ENST00000532725 EXOSC4Q9NPD3 245 aaKnown RBP16.3■□□□□ 0.2
CPSF1-209ENST00000532725 IL36GQ9NZH8 169 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 LRRC42Q9Y546 428 aa16.3■□□□□ 0.2
CPSF1-209ENST00000532725 IGHV1-69DA0A0B4J2H0 117 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 SIRPB1O00241 398 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 RRP9O43818 475 aaKnown RBP16.29■□□□□ 0.2
CPSF1-209ENST00000532725 IGHV1-69P01742 117 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 GABRR1P24046 479 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 PRTN3P24158 256 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 OR3A1P47881 315 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 GRK1Q15835 563 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 GDPD3Q7L5L3 318 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 SIGLECL1Q8N7X8 197 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 FAM192AQ9GZU8 254 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 CHST6Q9GZX3 395 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 METTL9Q9H1A3 318 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 METTL8Q9H825 291 aaKnown RBP16.29■□□□□ 0.2
CPSF1-209ENST00000532725 SIRT7Q9NRC8 400 aa16.29■□□□□ 0.2
CPSF1-209ENST00000532725 MEGF11A6BM72 1044 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 RNASEK-C17orf49H0YIS7 233 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 MGST3O14880 152 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 DEGS1O15121 323 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 HTR3BO95264 441 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 SRMP19623 302 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 DLX1P56177 255 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 DLX6P56179 175 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 RPS25P62851 125 aaKnown RBP16.28■□□□□ 0.2
CPSF1-209ENST00000532725 SCN1BQ07699 218 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 BLMHQ13867 455 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 ZNF273Q14593 569 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 KRTAP24-1Q3LI83 254 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 RUSC1-AS1Q66K80 236 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 ZNF367Q7RTV3 350 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 SPARTQ8N0X7 666 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 TMEM158Q8WZ71 300 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 NR1H4Q96RI1 486 aaPredicted RBP16.28■□□□□ 0.2
CPSF1-209ENST00000532725 PRDM13Q9H4Q3 707 aa16.28■□□□□ 0.2
CPSF1-209ENST00000532725 A0A1W2PPH5 198 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 SLC33A1O00400 549 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-209ENST00000532725 UCHL1P09936 223 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 CD37P11049 281 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 ZNF44P15621 663 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 CCL3L1P16619 93 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 ERP29P30040 261 aaKnown RBP16.27■□□□□ 0.2
CPSF1-209ENST00000532725 EDDM3BP56851 147 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 PRB3Q04118 309 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-209ENST00000532725 MEF2CQ06413 473 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-209ENST00000532725 TRAM1Q15629 374 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 LRRTM1Q86UE6 522 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 PDZD9Q8IXQ8 264 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 JAGN1Q8N5M9 183 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 ZDHHC22Q8N966 263 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 CHST4Q8NCG5 386 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 PPP1R35Q8TAP8 253 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 PHYHIPQ92561 330 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 MUL1Q969V5 352 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 ESM1Q9NQ30 184 aa16.27■□□□□ 0.2
CPSF1-209ENST00000532725 C17orf98A8MV24 154 aa16.26■□□□□ 0.19
CPSF1-209ENST00000532725 ZNF780AO75290 641 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-209ENST00000532725 PSMA1P25786 263 aaKnown RBP16.26■□□□□ 0.19
CPSF1-209ENST00000532725 ERVFRD-1P60508 538 aa16.26■□□□□ 0.19
CPSF1-209ENST00000532725 IL13RA2Q14627 380 aa16.26■□□□□ 0.19
CPSF1-209ENST00000532725 SSX1Q16384 188 aa16.26■□□□□ 0.19
CPSF1-209ENST00000532725 PIGYQ3MUY2 71 aa16.26■□□□□ 0.19
CPSF1-209ENST00000532725 NHLRC3Q5JS37 347 aa16.26■□□□□ 0.19
CPSF1-209ENST00000532725 HCP5Q6MZN7 132 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms