RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SLC19A2O60779 497 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 CNMDO75829 334 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 MAS1P04201 325 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 KRT16P08779 473 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 OR8G3PP0DMU2 310 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 TCP1P17987 556 aaKnown RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 GALP22466 123 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 MPIP34949 423 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 PRSS3P35030 304 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 OR1G1P47890 313 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 ZNF235Q14590 738 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 OR2T5Q6IEZ7 315 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 TBPL2Q6SJ96 375 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 TMCO2Q7Z6W1 182 aaPredicted RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 DAZ4Q86SG3 579 aaKnown RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 RAB43Q86YS6 212 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 SGPP2Q8IWX5 399 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 MICU2Q8IYU8 434 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 ORMDL3Q8N138 153 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 COMMD1Q8N668 190 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 OR4M2Q8NGB6 313 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 OR2T29Q8NH02 315 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 ITFG1Q8TB96 612 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 ZNF75CPQ92670 426 aaPredicted RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 FAM19A4Q96LR4 140 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 BPIFA3Q9BQP9 254 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 MTG1Q9BT17 334 aaPredicted RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 CLSTN2Q9H4D0 955 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 LYRM4Q9HD34 91 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 DAZ1Q9NQZ3 744 aaKnown RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 RBFOX1Q9NWB1 397 aaKnown RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 ZNF586Q9NXT0 402 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 RAB23Q9ULC3 237 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 TRIP11Q15643 1979 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 PCNX1Q96RV3 2341 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 TICRRQ7Z2Z1 1910 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 CACNA1DQ01668 2161 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 ROCK2O75116 1388 aaKnown RBP1.74□□□□□ -2.13
CD44-233ENST00000531141 DOPEY2Q9Y3R5 2298 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 SVILO95425 2214 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 ZNF407Q9C0G0 2248 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 MROH5Q6ZUA9 1318 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 ITPR2Q14571 2701 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 GOLGA8JA6NMD2 632 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 TEX46H3BTG2 121 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 CLDN34H7C241 214 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 DNAJB6O75190 326 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 SCELO95171 688 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 PTHP01270 115 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 IGLV6-57P01721 117 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 MMP7P09237 267 aaPredicted RBP1.74□□□□□ -2.13
CD44-233ENST00000531141 GOLGA8HP0CJ92 632 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 GZMAP12544 262 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 LGALS3P17931 250 aaKnown RBP1.74□□□□□ -2.13
CD44-233ENST00000531141 CXCR1P25024 350 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 MAGEA1P43355 309 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 CLDN18P56856 261 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 GBE1Q04446 702 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 GABRA6Q16445 453 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 SP6Q3SY56 376 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 CAVIN4Q5BKX8 364 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 TMEM236Q5W0B7 351 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 FAM104BQ5XKR9 115 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 KRTAP5-7Q6L8G8 165 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 FAM122BQ7Z309 247 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 SLC30A8Q8IWU4 369 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 RCN3Q96D15 328 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 RDH12Q96NR8 316 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 SCGB3A2Q96PL1 93 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 AGMATQ9BSE5 352 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 DYRK4Q9NR20 520 aa1.74□□□□□ -2.13
CD44-233ENST00000531141 MRPL22Q9NWU5 206 aaKnown RBP1.74□□□□□ -2.13
CD44-233ENST00000531141 BAZ2AQ9UIF9 1905 aaKnown RBP1.74□□□□□ -2.13
CD44-233ENST00000531141 NF1P21359 2839 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 ACACAQ13085 2346 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 UTP20O75691 2785 aaKnown RBP1.73□□□□□ -2.13
CD44-233ENST00000531141 TRAV25A0A0B4J276 109 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 A0A1W2PNN7 141 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 ISPDA4D126 451 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 CASC3O15234 703 aaKnown RBP1.73□□□□□ -2.13
CD44-233ENST00000531141 MPDU1O75352 247 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 IGHV1-46P01743 117 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 PFN1P07737 140 aaKnown RBP1.73□□□□□ -2.13
CD44-233ENST00000531141 INAFM2P0DMQ5 153 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 THRAP10827 490 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 CD82P27701 267 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 TGM4P49221 684 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 PPP1CAP62136 330 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 DEFB103AP81534 67 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 PRKCDQ05655 676 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 DNAJC3Q13217 504 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 STEAP4Q687X5 459 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 APOBEC3HQ6NTF7 200 aaKnown RBP1.73□□□□□ -2.13
CD44-233ENST00000531141 C16orf87Q6PH81 154 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 BBS7Q8IWZ6 715 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 KATNAL2Q8IYT4 538 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 INO80EQ8NBZ0 244 aaPredicted RBP1.73□□□□□ -2.13
CD44-233ENST00000531141 OR52K1Q8NGK4 314 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 OR1S1Q8NH92 325 aa1.73□□□□□ -2.13
CD44-233ENST00000531141 TMEM159Q96B96 161 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms