RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	CLEC2D	Q9UHP7	191 aa		2.58	□□□□□ -2
CD44-223	ENST00000526553	WIF1	Q9Y5W5	379 aa		2.58	□□□□□ -2
CD44-223	ENST00000526553		A0A1W2PP64	1363 aa		2.58	□□□□□ -2
CD44-223	ENST00000526553	SLC5A10	A0PJK1	596 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	IQCF5	A8MTL0	148 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	CENPBD1	B2RD01	187 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553		F8VP50	259 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	RNASEK-C17orf49	H0YIS7	233 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	hCG_2039718	K7EN88	272 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553		M0R1X1	148 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	PLPP3	O14495	311 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	RBFOX2	O43251	390 aa	Known RBP eCLIP	2.57	□□□□□ -2
CD44-223	ENST00000526553	ZNF207	O43670	478 aa	Known RBP	2.57	□□□□□ -2
CD44-223	ENST00000526553	PLIN3	O60664	434 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	SERPINB7	O75635	380 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	CD74	P04233	296 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	OPRK1	P41145	380 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	LAMTOR4	Q0VGL1	99 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	XRCC4	Q13426	336 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	SNRNP35	Q16560	246 aa	Known RBP	2.57	□□□□□ -2
CD44-223	ENST00000526553	C5orf47	Q569G3	176 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	RNASE13	Q5GAN3	156 aa	Known RBP	2.57	□□□□□ -2
CD44-223	ENST00000526553	TTC32	Q5I0X7	151 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553		Q5W150	140 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	ZNF695	Q8IW36	515 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	OR9A2	Q8NGT5	310 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	ANGPTL6	Q8NI99	470 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	GHSR	Q92847	366 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	ADTRP	Q96IZ2	230 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	RILP	Q96NA2	401 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	OR2M4	Q96R27	311 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	C20orf144	Q9BQM9	153 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	CHCHD7	Q9BUK0	85 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	TMED9	Q9BVK6	235 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	ACOT13	Q9NPJ3	140 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	NLE1	Q9NVX2	485 aa	Predicted RBP	2.57	□□□□□ -2
CD44-223	ENST00000526553	NXT1	Q9UKK6	140 aa	Known RBP	2.57	□□□□□ -2
CD44-223	ENST00000526553	RTL1	A6NKG5	1358 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	ZNF831	Q5JPB2	1677 aa		2.57	□□□□□ -2
CD44-223	ENST00000526553	TJP1	Q07157	1748 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	SCN11A	Q9UI33	1791 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	KIF26A	Q9ULI4	1882 aa	Predicted RBP	2.56	□□□□□ -2
CD44-223	ENST00000526553	CENPVL3	A0A0U1RRI6	287 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	CCDC22	O60826	627 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	SCO1	O75880	301 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	YEATS4	O95619	227 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	LDOC1	O95751	146 aa	Predicted RBP	2.56	□□□□□ -2
CD44-223	ENST00000526553	CD8A	P01732	235 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	GIMD1	P0DJR0	217 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	ME2	P23368	584 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	STX4	Q12846	297 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	SLC25A35	Q3KQZ1	300 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	FBXL19-AS1	Q494R0	122 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	LINC00483	Q53H64	154 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	TEX30	Q5JUR7	227 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	SAXO2	Q658L1	398 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	COMTD1	Q86VU5	262 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	LRRC8A	Q8IWT6	810 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	TTL	Q8NG68	377 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	OR4M2	Q8NGB6	313 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	OR2Y1	Q8NGV0	311 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	LINC01560	Q8TB33	94 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	TMEM159	Q96B96	161 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	ZFP3	Q96NJ6	502 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	TRNT1	Q96Q11	434 aa	Known RBP	2.56	□□□□□ -2
CD44-223	ENST00000526553	SLC38A1	Q9H2H9	487 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	ZNF430	Q9H8G1	570 aa	Predicted RBP	2.56	□□□□□ -2
CD44-223	ENST00000526553	SPACA1	Q9HBV2	294 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	OR2S2	Q9NQN1	319 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	YTHDF2	Q9Y5A9	579 aa	Known RBP	2.56	□□□□□ -2
CD44-223	ENST00000526553	FADS3	Q9Y5Q0	445 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	FLT4	P35916	1363 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	KDM6A	O15550	1401 aa	Predicted RBP	2.56	□□□□□ -2
CD44-223	ENST00000526553	ANKRD26	Q9UPS8	1709 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	ARFGEF2	Q9Y6D5	1785 aa		2.56	□□□□□ -2
CD44-223	ENST00000526553	IGHV6-1	A0A0B4J1U7	121 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553		A0A1B0GTI1	187 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	NDUFS5	O43920	106 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	MRPL3	P09001	348 aa	Known RBP	2.55	□□□□□ -2
CD44-223	ENST00000526553	PAX6	P26367	422 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	HTR2B	P41595	481 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	GUSBP1	Q15486	140 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	MAPRE2	Q15555	327 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	OR4D1	Q15615	310 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	LY6E	Q16553	131 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	ZNF684	Q5T5D7	378 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	KDM4D	Q6B0I6	523 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	ERICH5	Q6P6B1	374 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	UGT2A3	Q6UWM9	527 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	RNF10	Q8N5U6	811 aa	Known RBP	2.55	□□□□□ -2
CD44-223	ENST00000526553	CDRT4	Q8N9R6	151 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	ACBD4	Q8NC06	268 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	SYNPR	Q8TBG9	265 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	IFT81	Q8WYA0	676 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	SLC25A46	Q96AG3	418 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	CYTH2	Q99418	400 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	SPIN2A	Q99865	258 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	SPIN2B	Q9BPZ2	258 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	PLEKHF2	Q9H8W4	249 aa		2.55	□□□□□ -2
CD44-223	ENST00000526553	PLEKHA1	Q9HB21	404 aa		2.55	□□□□□ -2

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