RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 UPK3AO75631 287 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 DXOO77932 396 aaKnown RBP11.16□□□□□ -0.62
USP53-209ENST00000514665 IGHV3-43DP0DP04 118 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 RPS23P62266 143 aaKnown RBP11.16□□□□□ -0.62
USP53-209ENST00000514665 FABP9Q0Z7S8 132 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 PIGYQ3MUY2 71 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 WDR74Q6RFH5 385 aaPredicted RBP11.16□□□□□ -0.62
USP53-209ENST00000514665 C17orf78Q8N4C9 275 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 ZPBPQ9BS86 351 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 KLK13Q9UKR3 277 aa11.16□□□□□ -0.62
USP53-209ENST00000514665 ZNF320A2RRD8 509 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 ZNHIT1O43257 154 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 DTYMKP23919 212 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 LPAR6P43657 344 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 MEOX1P50221 254 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 SMUG1Q53HV7 270 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 LYZL2Q7Z4W2 148 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 OR10X1Q8NGY0 326 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 TMEM37Q8WXS4 190 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 ZNF331Q9NQX6 463 aaPredicted RBP11.15□□□□□ -0.62
USP53-209ENST00000514665 RYDENQ9NUL5 291 aaKnown RBP11.15□□□□□ -0.62
USP53-209ENST00000514665 GAR1Q9NY12 217 aaKnown RBP11.15□□□□□ -0.62
USP53-209ENST00000514665 TAAR3PQ9P1P4 343 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 PSG11Q9UQ72 335 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 LINC01387J3KSC0 135 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 YIF1AO95070 293 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 MBP02144 154 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 THY1P04216 161 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 KCNJ3P48549 501 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 OR2M3Q8NG83 312 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 OR6S1Q8NH40 331 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 GPR137Q96N19 417 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 TXN2Q99757 166 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 TMEM74BQ9NUR3 256 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 CELA2AP08217 269 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 OR3A1P47881 315 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 GNB1P62873 340 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 SCGB2A2Q13296 93 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 RGS7BPQ6MZT1 257 aaPredicted RBP11.15□□□□□ -0.62
USP53-209ENST00000514665 TMPRSS7Q7RTY8 843 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 COMMD1Q8N668 190 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 MRPS24Q96EL2 167 aaKnown RBP11.15□□□□□ -0.62
USP53-209ENST00000514665 SLC2A9Q9NRM0 540 aa11.15□□□□□ -0.62
USP53-209ENST00000514665 IGHV5-10-1A0A0J9YXX1 117 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 CLN5O75503 358 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 MT-CO3P00414 261 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 FGF8P55075 233 aaPredicted RBP11.14□□□□□ -0.63
USP53-209ENST00000514665 LGALS4P56470 323 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 RNF212Q495C1 297 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 ZNF766Q5HY98 468 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 TUSC5Q8IXB3 177 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 NTNG2Q96CW9 530 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 ZNF501Q96CX3 271 aaPredicted RBP11.14□□□□□ -0.63
USP53-209ENST00000514665 TCFL5Q9UL49 500 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 TOX3O15405 576 aaPredicted RBP11.14□□□□□ -0.63
USP53-209ENST00000514665 FCGR3BO75015 233 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 F12P00748 615 aaPredicted RBP11.14□□□□□ -0.63
USP53-209ENST00000514665 NMBP08949 121 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 IL3RAP26951 378 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 ZNF83P51522 516 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 UBE2G1P62253 170 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 H3F3AP84243 136 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 SOX7Q9BT81 388 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 SMIM10L1P0DMW3 83 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 SLC38A11Q08AI6 406 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 SSPNQ14714 243 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 Q3ZCU0 254 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 PHYHD1Q5SRE7 291 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 SMIM10Q96HG1 83 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 CLEC1BQ9P126 229 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 NOTCH3Q9UM47 2321 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 G3V3Q6 166 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 PPYP01298 95 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 MPGP29372 298 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 PRR27Q6MZM9 219 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 TBC1D26Q86UD7 250 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 CTHRC1Q96CG8 243 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 SAT2Q96F10 170 aaPredicted RBP11.14□□□□□ -0.63
USP53-209ENST00000514665 ZNF426Q9BUY5 554 aa11.14□□□□□ -0.63
USP53-209ENST00000514665 A0A1B0GTQ1 180 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 hCG_1809904A0A1W2PP81 198 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 A0A1W2PPE2 198 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 A0A1W2PR64 198 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 A0A1W2PRV1 198 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 MAP1LC3B2A6NCE7 125 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 IL13RA2Q14627 380 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 LIAT1Q6ZQX7 453 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 MRGPRDQ8TDS7 321 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 RAB40CQ96S21 281 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 MAP1LC3BQ9GZQ8 125 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 CTDSP1Q9GZU7 261 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 RAB33BQ9H082 229 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 SLC25A22Q9H936 323 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 CCL28Q9NRJ3 127 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 LPAR3Q9UBY5 353 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 TNS1Q9HBL0 1735 aaKnown RBP11.13□□□□□ -0.63
USP53-209ENST00000514665 A0A0J9YW62 118 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 CHST1O43916 411 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 SUB1P53999 127 aaKnown RBP eCLIP11.13□□□□□ -0.63
USP53-209ENST00000514665 RNPS1Q15287 305 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms