RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 MS4A18H0YCH9 400 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 ZNF25P17030 456 aaPredicted RBP8.43□□□□□ -1.06
VCAN-210ENST00000513960 MS4A18Q3C1V0 323 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 SPEM1Q8N4L4 309 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 SLC38A9Q8NBW4 561 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 ASB10Q8WXI3 467 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 PRDM13Q9H4Q3 707 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 METTL7AQ9H8H3 244 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 SERINC1Q9NRX5 453 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 SEMA5BQ9P283 1151 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 PCNX3Q9H6A9 2034 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 A0A1W2PNR3 127 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 CEBPZOSA8MTT3 80 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 NKX2-1P43699 371 aaPredicted RBP8.43□□□□□ -1.06
VCAN-210ENST00000513960 SUMO3P55854 103 aaPredicted RBP8.43□□□□□ -1.06
VCAN-210ENST00000513960 MTCP1P56278 107 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 GABREP78334 506 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 FOXF1Q12946 379 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 ZNF266Q14584 549 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 ELOBQ15370 118 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 MPV17LQ2QL34 196 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 FAM69BQ5VUD6 431 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 SYT3Q9BQG1 590 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 RARRES3Q9UL19 164 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 OSGIN2Q9Y236 505 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 EYSQ5T1H1 3165 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 HSPB6O14558 160 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 SCRG1O75711 98 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 IL2RGP31785 369 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 CD200P41217 278 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 ERVS71-1P61550 626 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 RPS18P62269 152 aaKnown RBP8.43□□□□□ -1.06
VCAN-210ENST00000513960 LSM6P62312 80 aaKnown RBP8.43□□□□□ -1.06
VCAN-210ENST00000513960 EWSR1Q01844 656 aaKnown RBP eCLIP8.43□□□□□ -1.06
VCAN-210ENST00000513960 ZP4Q12836 540 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 TESK1Q15569 626 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 THNSL2Q86YJ6 484 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 UEVLDQ8IX04 471 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 GALNT14Q96FL9 552 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 GPR87Q9BY21 358 aa8.43□□□□□ -1.06
VCAN-210ENST00000513960 A0A1W2PR80 420 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 HMGB3O15347 200 aaKnown RBP8.42□□□□□ -1.06
VCAN-210ENST00000513960 RPL29P47914 159 aaKnown RBP8.42□□□□□ -1.06
VCAN-210ENST00000513960 DEGS2Q6QHC5 323 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 ZNF574Q6ZN55 896 aaPredicted RBP8.42□□□□□ -1.06
VCAN-210ENST00000513960 HIST3H2BBQ8N257 126 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 DNASE2BQ8WZ79 361 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 MESP1Q9BRJ9 268 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 PIGLQ9Y2B2 252 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 A0A1W2PPQ1 181 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 FAM157AC9JC47 383 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 IFNA5P01569 189 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 CFPP27918 469 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 APLNRP35414 380 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 MMP16P51512 607 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 HLA-DRB3P79483 266 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 OR2C3Q8N628 320 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 RNF133Q8WVZ7 376 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 OR5B12Q96R08 314 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 CBLN4Q9NTU7 201 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 FAM206AQ9NX38 181 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 MSTNO14793 375 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 CXCL12P48061 93 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 ELLP55199 621 aaPredicted RBP8.42□□□□□ -1.06
VCAN-210ENST00000513960 TMEM176BQ3YBM2 270 aaPredicted RBP8.42□□□□□ -1.06
VCAN-210ENST00000513960 ZNF66Q6ZN08 573 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 RPUSD4Q96CM3 377 aaKnown RBP8.42□□□□□ -1.06
VCAN-210ENST00000513960 KCNK17Q96T54 332 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 NAA60Q9H7X0 242 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 IL17BQ9UHF5 180 aa8.42□□□□□ -1.06
VCAN-210ENST00000513960 A0A0U1RQK1 487 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 XKRY2A2RUG3 117 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 TOX3O15405 576 aaPredicted RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 ZFAND5O76080 213 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 FUT3P21217 361 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 PMS2P11Q13670 270 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 FAM185AQ8N0U4 392 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 SCGB1C1Q8TD33 95 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 ALKBH4Q9NXW9 302 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 OR14J1Q9UGF5 321 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 MCTS1Q9ULC4 181 aaKnown RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 PRUNE2Q8WUY3 3088 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 ELOA3CA0A087WX78 387 aaPredicted RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 ISG15P05161 165 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 ZNF16P17020 682 aaPredicted RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 MSX1P28360 303 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 RBM24Q9BX46 236 aaKnown RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 NECAP2Q9NVZ3 263 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 RBM7Q9Y580 266 aaKnown RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 LOC390937A0A1W2PQ73 354 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 NKX2-6A6NCS4 301 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 LIPT2A6NK58 231 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 CLDN34H7C241 214 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 OR2J2O76002 312 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 CTSDP07339 412 aaPredicted RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 DYNLT3P51808 116 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 TLE4Q04727 773 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 CST9LP1Q5W188 147 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 OR5AS1Q8N127 324 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 NFAM1Q8NET5 270 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms