RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 UTF1Q5T230 341 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 C16orf89Q6UX73 402 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 ZNF429Q86V71 674 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 ENTHD1Q8IYW4 607 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 OR14K1Q8NGZ2 314 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 TRMT10AQ8TBZ6 339 aaKnown RBP8.54□□□□□ -1.04
DDX41-216ENST00000513562 TEX47Q8TBZ9 253 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 TOMM40LQ969M1 308 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 GON7Q9BXV9 100 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 MROQ9BYG7 248 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 GLS2Q9UI32 602 aa8.54□□□□□ -1.04
DDX41-216ENST00000513562 IGKV1-27A0A075B6S5 117 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 A0A1B0GTI1 187 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 FAM230AA0A1W2PPH8 454 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 A6NIN4 97 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 PRR23D1E9PI22 279 aaPredicted RBP8.53□□□□□ -1.04
DDX41-216ENST00000513562 LDLRAD4O15165 306 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 ZNF254O75437 659 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 SRSF10O75494 262 aaKnown RBP8.53□□□□□ -1.04
DDX41-216ENST00000513562 PRR23D2P0DMB1 279 aaPredicted RBP8.53□□□□□ -1.04
DDX41-216ENST00000513562 PTGFRP43088 359 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 GPR12P47775 334 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 HCCSP53701 268 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 CDC42P60953 191 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 CFHR3Q02985 330 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 HNF4GQ14541 408 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 ZNF146Q15072 292 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 SLC35D3Q5M8T2 416 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 ASPHD1Q5U4P2 390 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 CD300LDQ6UXZ3 194 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 SLC25A26Q70HW3 274 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 Q8IYB0 196 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 ZNF679Q8IYX0 411 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 OR11H1Q8NG94 326 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 OR4D6Q8NGJ1 314 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 NSMCE2Q96MF7 247 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 YIPF3Q9GZM5 350 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 MOB1AQ9H8S9 216 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 ISYNA1Q9NPH2 558 aa8.53□□□□□ -1.04
DDX41-216ENST00000513562 RBFOX1Q9NWB1 397 aaKnown RBP8.53□□□□□ -1.04
DDX41-216ENST00000513562 AMMECR1Q9Y4X0 333 aaPredicted RBP8.53□□□□□ -1.04
DDX41-216ENST00000513562 TRBV2A0A0J9YWF9 115 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 TRIM64CA6NLI5 447 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 ARPC2O15144 300 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 ENTPD6O75354 484 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 E2F6O75461 281 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 INMTO95050 263 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 IGKV1D-33P01593 117 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 IGKV1-33P01594 117 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 IGHG4P01861 327 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 OR8U8P0C7N1 319 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 HSD17B1P14061 328 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 GP9P14770 177 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 SLC2A5P22732 501 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 DUSP1P28562 367 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 MAGEA2P43356 314 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 GLIPR1P48060 266 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 RIDAP52758 137 aaKnown RBP8.52□□□□□ -1.05
DDX41-216ENST00000513562 PPP1R8Q12972 351 aaKnown RBP8.52□□□□□ -1.05
DDX41-216ENST00000513562 KPNB1Q14974 876 aaKnown RBP8.52□□□□□ -1.05
DDX41-216ENST00000513562 MICAQ29983 383 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 SPIN3Q5JUX0 258 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 TGIF2LXQ8IUE1 241 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 ELMOD2Q8IZ81 293 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 BBS1Q8NFJ9 593 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 OR9G1Q8NH87 305 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 MYOZ3Q8TDC0 251 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 HRASLS5Q96KN8 279 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 NIPSNAP1Q9BPW8 284 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 ABCG5Q9H222 651 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 FRAS1Q86XX4 4008 aa8.52□□□□□ -1.05
DDX41-216ENST00000513562 ODAMA1E959 279 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 FUOMA2VDF0 154 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 LOC110117498-PIK3R3F6TDL0 507 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 H3BN98 237 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 SIRPB1O00241 398 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 SPNP16150 400 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 CCL1P22362 96 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 PSMB8P28062 276 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 NPBWR2P48146 333 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 RAB7AP51149 207 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 RPS7P62081 194 aaKnown RBP8.51□□□□□ -1.05
DDX41-216ENST00000513562 AESQ08117 197 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 MADCAM1Q13477 382 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 EBI3Q14213 229 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 DIAPH2-AS1Q14236 149 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 UBE2V2Q15819 145 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 C17orf58Q2M2W7 97 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 BCL2L15Q5TBC7 163 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 CPOQ8IVL8 374 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 OR8H3Q8N146 312 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 FAM58AQ8N1B3 248 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 FAM71E2Q8N5Q1 922 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 ASB17Q8WXJ9 295 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 KIRREL1Q96J84 757 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 LIN7CQ9NUP9 197 aaKnown RBP8.51□□□□□ -1.05
DDX41-216ENST00000513562 OR52A1Q9UKL2 312 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 COPS3Q9UNS2 423 aa8.51□□□□□ -1.05
DDX41-216ENST00000513562 ZNF729A6NN14 1252 aaPredicted RBP8.5□□□□□ -1.05
DDX41-216ENST00000513562 I3L521 148 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms